Array 1 491631-492853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWJ010000003.1 Listeria marthii strain FSL L7-0503 NODE_3_length_498234_cov_23.155214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 491631 36 100.0 30 .................................... TAAAATGATACCTAATGCTAAACTTGTTAA 491697 36 100.0 30 .................................... TAACACAATTTTGGATGAAATGCAAGAAGA 491763 36 100.0 30 .................................... TGTATTCACTACTCTTTAAATGTTTATTAC 491829 36 100.0 30 .................................... AGGTACCTATCGAGAAGATGTAGTAATTGA 491895 36 100.0 30 .................................... CTCCGCCTGCGAGAATACCGGCCAGGGTGC 491961 36 100.0 30 .................................... TCCACTGACGGCGAAACTGCCGCGCACGGA 492027 36 100.0 30 .................................... TGCGTTTGCGTAAATACTTGTTCTAAACTC 492093 36 100.0 30 .................................... TTTACTTTTCTTTATTGTTTTATTTAGTGT 492159 36 100.0 30 .................................... GGGTATTAACGACGGCATCTATCTCATTGA 492225 36 100.0 30 .................................... AACGCTTTAATTGCAACCACATATCCATCA 492291 36 100.0 30 .................................... TTCCGTAAATCCATCCACAACAGCAACGAT 492357 36 100.0 30 .................................... TGATTCTTGAAAATAAACAAGAAGCGAAAA 492423 36 100.0 30 .................................... AATTCTATCGCCGCGCTACGAGCTAGAGAC 492489 36 100.0 30 .................................... AGAAGTGAAAAAGGATGTCACACTTAGTGG 492555 36 97.2 30 ..........................T......... TATTTCATAGATAATCCAACTAACATTTTA 492621 36 100.0 30 .................................... AATACGCGATTAAATTCGGGGAAAATTAAA 492687 36 100.0 30 .................................... TCAAGCTGCATTTAATCAAAGTATTCAAAC 492753 36 94.4 29 .........................A........C. ATCTGATGAAGATAACTATGCTGAAAAAA 492818 36 80.6 0 ......A......A......A..G........T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAAAATCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTCGATAGCCTTTAACAAGAACTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATTTGGATTTTTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAGGTTGCTATAAGCGAAGGAGAATTACCATTAAAAGGCGAAGTGCAAAATAACGATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGGGAGGAGAATCTTCTTTTAACGAATAAAACAGAATTATCCATAGAGAATTTAACCCCTGAAAGCTTGATTTTAAGCGACAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 177863-177441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWJ010000004.1 Listeria marthii strain FSL L7-0503 NODE_4_length_429963_cov_19.171494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 177862 29 100.0 38 ............................. GTAATTAGCTCCGTAGCTGACTTAATACGTTCAATGTA 177795 29 100.0 36 ............................. TTATTTTTTAGCATCGTTGCTTGGTTTCTAGTTAAC 177730 29 100.0 36 ............................. GCAATTACAGACATAAACGACACGAAAATCATTACT 177665 29 100.0 36 ............................. TTTTTTACATCTTTCTTTTTTAGCGTTAATAAATCA 177600 29 100.0 35 ............................. GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 177536 29 96.6 37 .......T..................... CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 177470 29 86.2 0 .......T......A.A......A..... | A [177446] ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.5 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : GTGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCCATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAAAGTTGCTGTTTTTTTGTGTTTGGTTATCTGTCGACCTTGGGTAGGGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGATTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCTGAACCCGACTCAACAAGATTCGAGTTTATTTTTATCCCCCTCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //