Array 1 137136-134729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRU01000002.1 Buttiauxella noackiae strain MCE Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137135 29 100.0 32 ............................. TCCCTGGGTGGCCCGGTTCTGCTTTCCAGTAT 137074 29 100.0 32 ............................. GCCACGCGGTTTAAACGCTTTATAGTTGAGGT 137013 29 100.0 32 ............................. TCCTCACGCACAGCCAACTAACACCAGTGACC 136952 29 100.0 32 ............................. GAAACATAACTAGCCACCTAGAAAGCTCAAAT 136891 29 100.0 32 ............................. ATGTGAAATTACTTATCACTTCCCGGAGGCTC 136830 29 100.0 32 ............................. GCGCATGAGCTCGGCATGACTAATGCGCAGGT 136769 29 100.0 32 ............................. CGCTACATCTTTGCGGTGTGCTTTCTTGCTTT 136708 29 100.0 32 ............................. ATTGCGCTCGTTCCTCAAATCATCAATCAGGG 136647 29 100.0 32 ............................. GGGGCGTAACCGGTGGAGGTGGCTCGGGTAAT 136586 29 100.0 32 ............................. GAATGGAATATATGACCAATAACAAACAAATC 136525 29 100.0 32 ............................. CGGAGCAAATGCAGGCGGATCAATCAATTCAG 136464 29 100.0 32 ............................. GTTAAACGACACGGTGTCGCCAGAATCGTATA 136403 29 100.0 32 ............................. CACACTATCCGTAATTGGAACGCTCGAATTTG 136342 29 100.0 32 ............................. ATAAAAATCTGACCGATGTGGCTGATAAAGCC 136281 29 100.0 32 ............................. GGACTATCAATAATTTTCTTCTGAGGATCTAC 136220 29 100.0 32 ............................. GTCACAAAATGCTTCGTCAATACTGTAGATCT 136159 29 100.0 32 ............................. AGCTATAAATGTCATGAAAACTATCTGTAGAA 136098 29 100.0 32 ............................. CGGCGGGAAGTGTTGATCCAGTTCAGGCGCTG 136037 29 100.0 32 ............................. CGATTATGGCTGCCATGTCAGTGATTGCGGCT 135976 29 100.0 32 ............................. GCGGCGCTTTGCGCATTCTGAATACACCAAAA 135915 29 100.0 32 ............................. CGGTTAATCAGCGTGCCGTGGATTGGGATAAT 135854 29 100.0 32 ............................. CGCACAACGTCGACACGGTGATCGAGGCTTGC 135793 29 100.0 32 ............................. GACGACGCATGAGTCTCACGACATTACAGGAA 135732 29 100.0 32 ............................. GTTGGGCTGACGGAACGGGTACCGGAACAGTG 135671 29 100.0 32 ............................. GGGGATACATTCCCCCATAACCCGAACGCTTA 135610 29 100.0 32 ............................. TGCTTATCATCGCACCACTCCGCGTGGCTAAC 135549 29 100.0 32 ............................. GCATCCCGTTGGAAAAAACCATCCGAGAATGC 135488 29 100.0 32 ............................. ATAGCGCAATGAATATGGCAGGAGGTTTGTTG 135427 29 100.0 32 ............................. AGATCAGCTACATGGGCGTATGCCCGTACTCC 135366 29 100.0 32 ............................. CCGCCTGATTCATGACCCACTTGAGCGATAAA 135305 29 100.0 32 ............................. AGCTAGGGGATCTTATCGCTAATTCAAAACAC 135244 29 100.0 32 ............................. TTAGCGGAATGAGTGAGAGCGTGCAGGGATTC 135183 29 100.0 32 ............................. CCGCCGCGCGTGCGGTTAATGTCGATGTATAG 135122 29 100.0 32 ............................. ATTACCTATATCAAAACGAAGGGCAAAAAGAA 135061 29 100.0 32 ............................. TATCGGGTCTTGCTGATGCGTGTTGATACGTC 135000 29 100.0 32 ............................. CGGATGAATTTATCCCGGTACATCATGCCATG 134939 29 100.0 32 ............................. TTAATGCCCTCTGCGCGATACTGCGCCTGAAT 134878 29 100.0 32 ............................. CAAATCATGAGCAACGCCGCCGGTTATGCCTT 134817 29 96.6 32 ............T................ ATGGGCGACCCATATTTCAAGCAGAAAGACTT 134756 28 86.2 0 .............G........-.C...T | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CACTAATAGAAGAAGTGCTTGCTGCGGGCGAAATCGATGTTCCCGCTCCTTTTGCAGATTCGCAACCTCCAGCTATCCCAGAGCCTTCATCAATAGGCGATATTGGGCACCGTGGGTGACGTATGAGTATGTTAACGATTGTCACGGAAAATGTTCCCCCACGTTTGCGCGGACGGCTTGCGGTATGGCTACTGGAAGTTCGAGCAGGTGTATACGTGGGAGATACCTCCCGCAAGGTGCGCGAAATGATATGGCAGCAAATCACGATGCTGGCTGATGAGGGAAATGTTGTTATGGCATGGGCAGTTAACAATGAGTCCGGTTTTGATTTCCAGACATGGGGAGAAAACAGAAGGATGCCGGTGGATCTTGATGGGCTTAGGTTAGTTTCATTTTACCCCGTTGAGAATCAATGAGTTAGAGTTCTTTAAAAATTAAGAAAAGTTGGTGGAATTTTTTTGTCTTAAAAATTCCTTTTAGAACAGTAATATAGTTTTAGA # Right flank : GTTTGTGGGGAGTATTTTTCTGGTATTAGTGCAATGTTGGTTAAATCGTCTAAAAATGAGAAGGCGAAAGCTCAGATGGACCCCGCCAAAATGCAAATTGAAGCTTTATCTGAAAGCGAGCGGAACCGCTTGTCAGCGAGGCCTATTGCATTAATTCAAATGAAAGCGGTACTTGGTCTGAAATGGGGCACTTTTAAGATGCAGTAGTGAATTGCACCCTCTTTTTTGTTTCACTTTTTCCCCGCTTTCGCCAACTCTTTCACCAGTGGCAGCATCACTCGCATCACATCATGGCTGCGTTTCTCGATGCGCGTTGGTAGCCACTTATCCAGATACTGTTGGTTATCGAATAATCCATTATGCCAACTTGTCCCATCCGGGAAGGCTTTGCTTTTCGCTCGTTGCTGATAACCATCTTTCTTGCCTAGTGACCAGTTAGTTGCTTCAACAGTAAGCACGGGAATGCCAGCTTCATCAAACACGTCAGCATCGCTACAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148055-145952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRU01000002.1 Buttiauxella noackiae strain MCE Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148054 29 100.0 32 ............................. AAAGCATCGGGTTCAGACTCAAATCCTTCAAT 147993 29 100.0 32 ............................. CGCGATGCTCAGGCCGCAGAACGCCAGCAAAC 147932 29 100.0 32 ............................. GTGTAGGGGTTGATAGCGATTTGGGTCAGGAT 147871 29 100.0 32 ............................. AAAGCACACTCGGAGACATTCCCGATTGGCTC 147810 29 100.0 32 ............................. AGTCATATAGAACAAAACCAAATGAGTTACCG 147749 29 100.0 32 ............................. CGCTATTTCATCATCAGCAAGGTCAGCCATAC 147688 29 100.0 32 ............................. GTGGCGCTCGTCGTCGTGATGGCCTGCGCTTT 147627 29 100.0 32 ............................. CCTTGCCGTCTTTATCGGTCAGAATATCAAAC 147566 29 100.0 32 ............................. AGAAAACAGAGCCGTGATTTGGTTTACCGTGT 147505 29 100.0 32 ............................. GTTTGCGCGGATACAACCCCAACGGGCTTGGC 147444 29 100.0 32 ............................. CCCCTTTAATGGGGCTTTTTTGTATTGCTTAC 147383 29 100.0 32 ............................. TGTGGATTCAACCTTTGAAAACTCGCCTATCT 147322 29 100.0 32 ............................. GAAATGATGAATGGCTGACACTCTTGCAGTGA 147261 29 100.0 32 ............................. CAGGTATTATCGGAGTCAGTCGACCGTCTCGA 147200 29 100.0 32 ............................. AAATGGTACTGCAGCGGCTAAACAATCAGCCG 147139 29 100.0 32 ............................. TTTGTCGCCGTGTACGTCTGCTGGCCATCCCG 147078 29 100.0 32 ............................. TTTGTCGCCGTGTACGTCTGCTGGCCATCCCG 147017 29 100.0 33 ............................. CGGTATTCGAACAGAATCTGGTTTCCCGATACG 146955 29 100.0 32 ............................. TTCTATACGATCTTGAATCGCGTAAATAACTG 146894 29 100.0 32 ............................. TTGCACGGCCTGCGCATGCTGAATCCGCTGAT 146833 29 100.0 32 ............................. TAATTATTAGCCGCTTTGATTCGGTCACGACC 146772 29 100.0 32 ............................. CCCTGTATAGCCTGCGGAAAGCCACTGGTTTA 146711 29 100.0 32 ............................. AGATTGGCCTCAATGAAGGGCTGAAGCTCTCC 146650 29 100.0 32 ............................. CTGGCAACTAATTATGATAATCAGCTGAACAA 146589 29 100.0 32 ............................. TCATACCGGCCTGACATTCACGTTGCCCGCAA 146528 29 100.0 32 ............................. GCGCTCTGCGAACGCCCTGTTATTTGCTGCAA 146467 29 100.0 32 ............................. GTAAATGGCTATTGCTTACCCCGACTGGCTAC 146406 29 100.0 32 ............................. ACTGCTTCTGTCTGGAGGCAAATACGAAGAGA 146345 29 100.0 32 ............................. CAGAATCGGAAAACCTGGAGTTCTTTGTAAAT 146284 29 100.0 32 ............................. TGGTTTCTAGCGGCGATGATGTAATCAATAGC 146223 29 100.0 32 ............................. GAGACACGCTGAGATTAACACAACTTGGGAAT 146162 29 100.0 32 ............................. CGGAAAGCGCTTCAATAGCGGCGGCATCCATT 146101 29 93.1 31 ........T....T............... AATACAGCCCCGATAGAGACGATTGGTGCCC 146041 29 100.0 32 ............................. CCAGAACCGAGGCGACCAACGACCTGTATTTT 145980 29 89.7 0 ..........G......A.........A. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GTGTTCCCCACGCGAGTGGGGATAAACCG # Left flank : TTACCGCTAATGGCCTGAAATACCATCCGCTATGGGATCAGGGCTATCTTTCTGTGGGCGACACTCACACCACGCGTAAGTGGGAAGAGGGTATGGCAGAAGAAGAGACACGTTTCTTTGGTTTGAAGCGCGAGTGCGGTTTGCACGAGGGCTGATTTTTTAGCTCCGACTTTCTCTCTTTGAAGGGAGAGGGTCGGGAGTTACTTCATCTTTATTGTTGTGATTGAACGATTCCCTCCTTTGTGTAACTCCCTTTATATCAATCTGACGTTAATCAATAACTACCTGAATAATTAATGGTTAATTAATTCACTTCTGATGGTAAAACCTGGTTGGCCAGTCAGATAAGCTTGAAATATTCGGTGAATATCGTAATTCGCTGTATGAGTAATAATTTATATTTTTAAATTCAAAGCGTTATCGCACCTTAAAAATCTGGAAAAATCGGTGGATTTTTTTAAAGCTAAAAAAACTTTATAGATCAGTATGATATTTTAAGA # Right flank : CGCCTGCAGCTTCATCCGGCAATCCAGCGCAAATGCTGTTCAAAAGGTTGAAGCCTTGTGTCTTGCCACTCAAATTATTTGGGATATATCCATTTATGCACATAAAAATATTTTAAATACAAAAAAATATCTGATTGATATCAAAAATTAAAAAATCAATTCACGTTCTATTGATCGCAATAATATTTATCTGGCTACCATAAATGAATCAGCAATCCGATTATTTCCACTATTGGGGAAAAACGAATCGCAAAAGCGATACTGATAATTCGGCTTATCATTTGTTGCCCTGGCACAGTCTGGATGTTGCCGCGTGTGGCTGGCAGATGGTGATGAACAATCACTTCCATGCAGCGGATATTTTTGCCGAGCTTGGATTTAAGCGTGATGAAGCGGCTCGCTGGTTTGCATGGATTCTTGGCGCTCATGATCTTGGAAAATTTGCTCGCGGCTTCCAGCAGTTATTTAGCGGGGTACATCCATTATTAGTTCCAGCCGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //