Array 1 2267-2742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLX010000028.1 Bacteroides caecigallinarum strain An406 An406_contig-110_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 2267 38 100.0 36 ...................................... GACTCAAGATGATATCCAGAATGCTATTGATGATTG 2341 38 100.0 33 ...................................... ACAGTTCCTGTCACTTATGATGAAATTGTAGCT 2412 38 100.0 36 ...................................... GAACAATGTCGGCTTCAAGGACGGAGAAATCTTTAA 2486 38 100.0 36 ...................................... GTAAAACGTTTGAATGAGGAACTAAAATTGTCGACA 2560 38 100.0 36 ...................................... TAAGAAAACAAGCAATTATATCTAATACTAAACAAG 2634 38 100.0 33 ...................................... GATTTATCTAATTATGTAGATGATAGAATAAAA 2705 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 7 38 100.0 35 GTCTTAATCCTTGTTCTAATGGAAGATACTCTCTGACT # Left flank : ATTTTTCACTTAACCTGAATAATACTTTTAATCCATCTTCACCAGGAGAGACATAACAAAGTTCAACTCTTTCGTCATTCTGTATTCTATGTCGTAAAGAACATATATCCATTCCTTTGTCAAGAATATGATCTATATCAATTACAAAATGATCTGTAAAAGCAAAATTTTCTGTTCTACGAAAAGGTAGATTATAAGATCCACACACAAAATATGGCAGAGTTCTTTTCATTGAAGAATATAACTTACAGTCTAGTTGTTTAACCATACGCAATTGTTTAATCTTTGATAACATTGCATTATCTGGCTTCGTCACAATACGAAAAATATCGCTCACATTAACTTGCTGCAATTTATCAGCTGAACTTTGAATGTTTAAACCATACATTAACATAGACATTACTTTTTTTATTATCAGCAAAAGTACATGTGTGCTTCGCATGATTTATGCGAACTTGATTTTTTTTGAATATTATTTGATGATAGAAACAAATGACGAA # Right flank : TCGTTAAAATATAATATCCTATCAACCAGACACATACACTATAAAACCTCTTACAATTTAACTTGTCTTAATAAAAAAATGAATATTATAAGACAATACTTTAATAATAAATACAGTAAACCAATGAACGATTTTTCAACACAAATATATTAAATATCAAGAAGATGACAAAATCTTAAACCATATAAGTAAACATAAAATAATAAGCCGGTATTGAAGATCCGAAACTTTAATTAAGCAATTACTTAAAGAGTAAAACTTTTATGAACAACTTTATAGACTTTCCATTTACCATCACTTCCTATTATAGCTTTCGCCTTTACATAACAGTTTTTAAGAATCCGCTCATTTTGTAGGATATGTTTAGGCACATAAACTCCTGCTACAAATCCAAAATTTGCAACTTCATTTCTATTCTTATATTTCAACTCCAATCTACCTTCAACTTCTTTTATGAGTTTTTCACTTGTTTCATCAGTAAACTGTAAATCAATAACTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTCTAATGGAAGATACTCTCTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 177-971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLX010000071.1 Bacteroides caecigallinarum strain An406 An406_contig-110_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 177 36 100.0 26 .................................... GTAGAAGTTGATATACGTAAGCAGCT 239 36 100.0 29 .................................... ATTGTGTAGGATAGGTCGGAGGCAATGAA 304 36 100.0 28 .................................... GTAGCAATAATGTCTCGACAAACGTATT 368 36 100.0 28 .................................... TAAGCTCAGCGTTGATAGACTTTGCCGC 432 36 100.0 28 .................................... TAGAAGATGCGCAAACAGAGTGTTTCTA 496 36 100.0 26 .................................... GGATACAGTACCGTTTGCAGCCAGTA 558 36 100.0 27 .................................... GTAAACAACAATGTCATAGAACTCCTC 621 36 100.0 28 .................................... TTAACCTTCAACCTTTTTCTTGTACGGC 685 36 100.0 26 .................................... GGCAGAAGACGGCCTTGGAATTGTAA 747 36 100.0 26 .................................... AGCCTTCGTTCCGGCTCACTAAGGGC 809 36 100.0 26 .................................... GTAATGATGCGTTCTTGATTTCTCAG 871 36 100.0 29 .................................... TAGTCCTATTATAAAGACTGTTTTCATTT 936 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 13 36 100.0 27 GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Left flank : CTTCCCATGACAATATGCAAATAATAATCGTTAAATTTGTGGACTCTTTTTTAGACGGGCGCTTGCTGGCGTCCGTCTAAAAGGGGACACCCTAAAATTGGAAGTTTACATCTAAAATAAATATCTGTCTATTTATTTGATTATTAATAGAAAATACTGATATTTGCATTATAAGTG # Right flank : TAATTCGAAGTCTTTTACGATTGTATATAATAACTTAAAAGTATACCACCCTAATAATTAAAAAATATACTATAGACAGTCAGTTAAAACTAAGTAGTAGTATACTTTAAAATTATTATGCATATACTAATTTGAAAATATTTTTATTTTATAGACAGTAAAAGTTTTTTGTTTACTTTTGTAATTGAAAAACATATATCTGACCATGGTTGAGCATTTTTATAACAACATTATATCCACCAACCGAATAGGAAAAATATTTGACAAAACAGTAGCCACATACAAATATTTCTGGTTCCTGTCAATCATGCAAATACATGCAAATACAGGAAACTTAAATATAAATGTATGGAACATAGTTACGCAGATGGTAGCCAATGCCTGGTATCCGATACATTATTTCAGGTTATCGTTTGGGAAAACAGATTCATTGTACGATATAGTTACACAGTTGCATAAAGAAATAAATATTCCTATTGATGCAGGAACGGAAGCTGTTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5544-3760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLX010000062.1 Bacteroides caecigallinarum strain An406 An406_contig-110_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5543 37 100.0 35 ..................................... AATAGGAGTTGTAAGAGAATGATAAAATAATAAGA 5471 37 100.0 34 ..................................... ACGAATGTTCATTACTTTAGCATTGATAGTTGCC 5400 37 100.0 36 ..................................... TACACACGAATGTTCATTACTTTAGCATTGATAGTT 5327 37 100.0 37 ..................................... AGAAAATATCTTCATTCATTTTCATTTCTTTGTCATA 5253 37 100.0 35 ..................................... GCTCTTTCTTCTTGGTATACATCAGGTCAAGACCT 5181 37 100.0 33 ..................................... CAGTTAGAGTAATTGAAGAGGCTGAGAAACAAG 5111 37 100.0 36 ..................................... TCAATAGAGGCGTTCTTTTTTTCTAATTTTTCATAA 5038 37 100.0 36 ..................................... CCAGCTTCGATAGCCTCAGCAATATTCTCTGTAAAA 4965 37 100.0 36 ..................................... CTCCGCATTTCACTCCTTTGTAAGCACCGAATACTA 4892 37 100.0 34 ..................................... AAAATGACCTTGCAAATCATATTGAATAATAGAT 4821 37 100.0 35 ..................................... ATAATAAACGAGCTGTTTTTGAGTCTATTGTAACT 4749 37 100.0 35 ..................................... ACTTCTTCACAATACTTGTAGTCAAGTTTTTTACT 4677 37 100.0 39 ..................................... AATTTTCTCATTTTGTCCTTCAATCCATTCTCTTCCGGA 4601 37 100.0 36 ..................................... TATATTACATTCCACTATACCATTCAGCATATCCAT 4528 37 100.0 37 ..................................... TGCTTCTGCAATAGTTAGAGCGAAATCAATTCTCTGT 4454 37 100.0 37 ..................................... ATAACCAAGCAGTATTAAAGAATGTAAAACTACCTAA 4380 37 100.0 37 ..................................... TTATCAGCTTTAAATTCTTTAGGGATGTCTTCTCTAT 4306 37 100.0 34 ..................................... CAAACCTCCTTTCCCGTCATCAGACAAATCTATA 4235 37 100.0 37 ..................................... TCCCATAAGGTTAGCATCTGAACAGACTTTGTTGACA 4161 37 100.0 35 ..................................... AGAACATCATTACAAATCCATTCGTCTTCAAACCA 4089 37 100.0 41 ..................................... AGAATAAGTATAATTGTTGATTTGAATGTTAATGTTTTCAT 4011 37 100.0 36 ..................................... TTCTTATAGGGACACTCTTCGAAATGACTTCCATAG 3938 37 91.9 34 ...........C.........A............T.. GTTCCAGTTGTATTAACAATAGCACCTGTGTAAA 3867 37 91.9 34 ..T..................T..T............ TCTAAGATAGTTTGTTTCTTATTCTGTTTTTCCA 3796 37 94.6 0 .......T.............T............... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 99.1 36 GTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Left flank : GGTTAATATTGTTTTTCTCTTATATACAAAGTTAACTATAATGGTATAGCTTTTTTAGTGCTATTTTATGTTATCCGTCACTTCCGATTTTAAACATAGGAACTTTTTCTTCAAAGATATGTATTTTCGATTTTATTACAATATCTGATATGAAATAATTTTAAAGTTTGAGTTTGCATGCTGGAAAATGGAAAAAGGCTTAAGATTTTGTTATCTTCCTAATCTTTACTATCTTTGTAAAGTAAAATCGTTCATTGGTTTACTGTATTATCATTAAAGTATTGCCTGTTTGTATTCAAATTTTCTGTTAAAATAAGTTGAGTTATGTGCGCGTTTATATTGTATATATCTGATAAATAGGATATTATATTTTAACG # Right flank : TATATATCTTAAATTGTTAATAATCTTCTTCTGTATCAGAGGGTATTTCCCGTTAAATTAGACTCATAATATTAGAAATTAATTGTATTTAGTTGATATTTTTGTTGAAAAGCTTATGAATTTATGATTTTTATTATAATATTTGTATATGAAATAATTTTAAAACTTTAATACTGATGGCATTTAATATTAATGAAGAATACAGATTAAGATGGTTGGATAATAAATTCCGTACCGGGGGAAAGTTTACCAAACAGGAATTGCTTGATTCTTTCGAGAGAGAAAATCCACATGAATCTTATGCTATGAGAACTTTGGAAAAAGATCTGGCGCGTATAAAATCAAAAGTTGAATTAGATTATGGATATGTACAGAAACGGAGGTGTTATGTATACCGTGATCGCAGACAGTCATATTTTGAAGTAGGGGACATTAATAAAATTCTGTTAGTGGAAAAATTTGTTGGAATGATGAGTCAGATTGATGGTATTGGAATTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGTATCTTCCATTAGAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //