Array 1 213026-208727 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMA01000002.1 Citrobacter amalonaticus strain S647 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213025 29 100.0 32 ............................. CATTTGCGCAATTAGTTCCACCGCAGATTGTT 212964 29 100.0 32 ............................. GGTATAGCCGGAACGTACTGCAAAACAAAATA 212903 29 100.0 32 ............................. AACCTTTGACGATTCTCTTAGGTTCCAGCATG 212842 29 100.0 32 ............................. ATGATGAACATGTTCACGGATGACATACTTCC 212781 29 100.0 32 ............................. CGCAGAACTGGTTACATGGTCACGCTGACGTA 212720 29 100.0 32 ............................. ATATCGCAAGAATAACTACCCTTTCCTTCCAA 212659 29 100.0 32 ............................. CGTCTGGTGTTTGTGTTGGTTTTGTTGTCGAC 212598 29 100.0 32 ............................. ATTTAAACATTGTATTATATATTTTAGGGCGC 212537 29 100.0 32 ............................. TTTTCGCAGTATCGCTACCGTTATCCCCAGCA 212476 29 100.0 32 ............................. CGTCATGCGGTGTCGTTGATGTGCGCAACGTG 212415 29 100.0 32 ............................. AAAACGCGCGTAAGCAGCGCGATCTGGCTCAA 212354 29 100.0 32 ............................. GCTGGCACGGGCAGGAACCGGTCCAGACTGGT 212293 29 100.0 32 ............................. TCCATCTGTGACGAATCGCTGTTTCCGACAAT 212232 29 100.0 32 ............................. TTACATTGAATTTGTCCTCTCTCAGAACGACA 212171 29 100.0 32 ............................. CCAGCAACATGATGCGCGATGAACGCATTCAG 212110 29 100.0 32 ............................. CAGTAACTATTGGAACCCATTGACGCGTAACT 212049 29 100.0 32 ............................. AACCTGATTCTGTCTTATATCTATGTCGGGTA 211988 29 100.0 32 ............................. ATTTAAAATTGCTGGGTCGTGGCTGCAATGAC 211927 29 100.0 32 ............................. TTCTTGTTACTGCATATATTTTTGAGGTTCAG 211866 29 100.0 32 ............................. GGTGATTTCCAGATCCGGGCGCACACGGATTT 211805 29 100.0 32 ............................. CGGCTTACAGGCTCAGGAGAGCCGGAACAACA 211744 29 100.0 32 ............................. ACGGTTTCATGTTTCTGGTGATGGGTTTTACC 211683 29 100.0 32 ............................. AATACCCAGCCTACCCTGGGTTGCCCGACACG 211622 29 100.0 32 ............................. AAGGCCGCCAGGTTGAAAGAGGCATACATCGC 211561 29 100.0 32 ............................. TTCATAAAACTCGGTCTGATGACTTCCCACGT 211500 29 100.0 32 ............................. ATGCTGACCGAGCGGGCCGACGCGATGGACGA 211439 29 100.0 32 ............................. CTCACAGAGCCCGTGCGCCAGCGTATAGAAGA 211378 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 211317 29 100.0 32 ............................. CGCATCCTCTTGACGATCTAACTTTTGGTCTT 211256 29 100.0 32 ............................. CGGTATGATGTGATCAACGTCTATTGCTGGTA 211195 29 100.0 32 ............................. ATGATTCGTGCAACTCATAAAACCCCGCTGGG 211134 29 100.0 33 ............................. CCCTTGTTATGCAGATCCATGACGTACTCACTG 211072 29 100.0 32 ............................. GCGAACAACCAACTGGCAGGTATCAGAATGGT 211011 29 100.0 32 ............................. CGATCGAGGCGGGGAAAGAAGTTAAAGGTGCG 210950 29 100.0 32 ............................. TTACTGCAGCAGTTGTGACATACGTCACCTGG 210889 29 100.0 32 ............................. TCTATACTGCTCACTGGTATTCAGTCGGCATG 210828 29 100.0 32 ............................. CCCCTCCATCACGCGGGGCTTTCTTTTGCCTG 210767 29 100.0 32 ............................. CTTTGACGGCACCACCCGTTTCAACGGGGAAA 210706 29 100.0 32 ............................. ATGACGACTGTAACTATCAGGAAAAAGCGGCT 210645 29 100.0 32 ............................. CACCCTCGTTTTTTCTTTGTGACAGGCGTGAA 210584 29 100.0 32 ............................. GCTTCGTCGGGACTACTTAGATCGCGGGATGT 210523 29 100.0 32 ............................. GCTTGTCGATTACTATACGAAAATGTTATCCA 210462 29 100.0 32 ............................. CCCACAGTTAGCTATTTGTCGCGCCCTGGCAT 210401 29 100.0 32 ............................. CCGTCCGGAGAACTCAACATCGAGGGTCTGCC 210340 29 100.0 32 ............................. CGATTGCCGCTCAGGTGGCAGATGAATACCAG 210279 29 100.0 32 ............................. GCAATTGTAACTAGTGGTATTTTTGAAATCCA 210218 29 100.0 32 ............................. ACATATTCATCGTAGTAGCCACATACAACAAC 210157 29 100.0 32 ............................. GCTATATGCGTATTTGCAAAAGCGCAGGTACA 210096 29 100.0 32 ............................. CCGAGCCAGTGCAGCCATGCCTTCGCTACGTG 210035 29 100.0 32 ............................. GGTGTTGTATCTAAAATATCAATGTCGCGTAG 209974 29 100.0 32 ............................. ACTTTATTTTTCAATCCATGATTCGGATGAAA 209913 29 100.0 32 ............................. ATAATATAACTTCATATATTCAAACTAGCGAA 209852 29 96.6 32 ............................T CACACATGGACGCGGGAAAGCAGCGCCAGGAC 209791 29 96.6 32 ............G................ CCCCTTCCCAACCTTGGCGCGGGCAGTCCCAA 209730 29 100.0 32 ............................. TTCGGTGATTTCACACGCACCCGCCCAAATAC 209669 29 96.6 32 A............................ AGCATCGGCATTAGAAATGGCAAGACCTGTAG 209608 29 100.0 32 ............................. CCAGTAAAATCCACAAAAGGCGCACCGAAATC 209547 29 96.6 32 .............T............... CAGAACGCTTCCCCGGGGACGTTCCTAAAAGT 209486 29 100.0 32 ............................. CGCCGGACCTCAGAGAACCGGCGCATGTTTAC 209425 29 100.0 32 ............................. TTTATCTAAACGAGAATCATGAGACATTTTAA 209364 29 100.0 32 ............................. TATCTGCTGTTTGGATTCTGGTCCGTTACCAT 209303 29 100.0 32 ............................. AAATCTCCACCGTTAATATTTCCGTTGTTGGT 209242 29 100.0 32 ............................. TTGTAGAGGAAATCGGGATCACGCTCGTCACG 209181 29 100.0 32 ............................. CTGAATATTCAACGATAACAGCATCAGGAAAT 209120 29 100.0 32 ............................. GGTACGGAACATACTCCGTTGGATAATCATAC 209059 29 96.6 32 .............T............... CCAATCGCGGTAGCAAAAGTCCCGGTTTGAAC 208998 29 100.0 32 ............................. AGAGAGATCGGGCAGCGATTGCAGCAAAAGAG 208937 29 96.6 32 ............T................ CGGGTTTTGAGTCCACGGTATGACCGCAATGA 208876 29 100.0 32 ............................. CGGGCGCTGGTGTGCTATCCGCTGAATATCGT 208815 29 100.0 32 ............................. CCGCGAAAGCGGCTTGAAGGGCGATCTTTAAA 208754 28 89.7 0 ...........A..C..........-... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTGCTGGCTGCCGGGGAGATTGAAATCCCTAAACCTTTTGAAGATGCCCAGCCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGTAATGTTGTCATGGCCTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCACCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : CGAATGAAGTCTTTTAACCAAAATTAAGACGCTTTCTCTGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATAATGCGCACTACGTCGCGGCTGCGGCGCTCAATTCTGTCGGGTAGCGCTTTGTCGATATGCTGCTGGTTATCCAGACGCACGTCGTGCCAGCTGTTCCCTGCGGGGAAGGCGGTGGTCCGGGCAAGCTGCTGATAACCGTCTTTCTTGCCCAGCCCCCAGTTGGTGGCCTCGACGGACAGCACCGAAATCCCGGCTTTATCAAACACCTCTGCGTCGTTACAGCAGCCCGTCCCTTTCGGGTAGTCCTTGTTCAGTCCTGGGTTTGTGCTGGCGGCGATGCCGTGGCTGTGGGCGATTTTCAGCGCCCGGTCACGCGTTAATTTCCGCACCGCTTCCGGCGTATTCTGCCCGCTGTTGAAATAGAGTTTGTCACCCACGATCAGATTATCGAGGTTGATCACCAGCAGCGTGTTTTTCTTCTCTGTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 690506-691375 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMA01000001.1 Citrobacter amalonaticus strain S647 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 690506 28 100.0 32 ............................ TGGCTAAAGAAACTGTTTTTCCGGTTCTGAAG 690566 28 100.0 32 ............................ TGTCAGGTTGCGCATATCAGCCTCCGTTCGAG 690626 28 100.0 33 ............................ GCAAAAAGGCGCATTAAAAAAGAATGCTGAATT 690687 28 100.0 32 ............................ CCATGCACGAATCGGCGGCGACCTGAAAACCA 690747 28 100.0 32 ............................ ATAAACCTCATAAACCATTTGCGCGTTTTCAT 690807 28 100.0 32 ............................ AGTAACAGTCAAATCACCATCGATTTCATATT 690867 28 100.0 33 ............................ AGCACCTCGGCTACATCCTTCGCCACAAACCAG 690928 28 100.0 32 ............................ CCTTTAACTAATTAAAAATTAAGATGCTTTGG 690988 28 100.0 32 ............................ TCCGGACAGTTGTGTTTGTGTCCGTTGTACGT 691048 28 100.0 32 ............................ TTTACGACAAGCGCCGCGCAGATGAAGTTATG 691108 28 100.0 32 ............................ GGACGCAGCACGCGGCAAAAAATCGGCTTAAA 691168 28 100.0 32 ............................ AAAAGCGCCTGGCGCTAACCGAGCAGGAAATC 691228 28 100.0 32 ............................ TAAATCGTGGTTTGACTCTCAGTCAGACGAAA 691288 28 100.0 32 ............................ TGGAGGGTGGCGCGGTCTGCTGCGATGATAGC 691348 28 82.1 0 ..G.....................TTTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGCCAGGAAGCGCGTAACTGGCTGGCGGAGAAGGGTTACGATCGGGCAATGGGCGCACGTCCGATGACGCGTGTGATTCAGGACAACCTGAAGAAACCGTTGGCGAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGGCAGGTTACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAGAAGCACAAGCCGGAAACTGCACATTAATTTTTACTCCCGCGCCTGACGTTGAACTTCAGGCATCGTTAAAATCCGTAACCTCTTTTGAGGCTACGGATTTTTTTTTATCCCATGTTCAAAGACTGACGGGCCAGGCGCTCAGTGTCAGCAGCGGATCTGTCAGCGACCCTTTTTTTAAGCCAGATTGTAATTTATTGATTTCTTGAAGAAAAACAGAATGGCGATAAAAAGGGTCAGGCGCATATTTATTGATATTTATCTTTATCGACAACGGTATAGCCATGTAATATTCCA # Right flank : TTCCTTCTGGATGATAATGCCTGGGATTGATATTTACGGCATGGATAATTTATTTATTACATTATTCATAAAATAACATTCATATTTCATATGAGCAGAAAGATAAAGTTTGCCAGTTATTGGTTTGTTGATTTTTGTCAATTTCAAAATTAAGTTCGATTCTGTACTATCGTTGCAATCCCGTCTTACTAATTATTATTTGAATAAATATGTCAGCGAATTTAATCACGCCAACGGATCTTAAAACCATTCTGCACTCGAAAAGAGCGAATATTTATTATCTTGAAAAATGTCGAGTGCAGATTAATGGTGGGCGCGTTGAATATGTGACGAGTGCTGGCAATGAATCTTATTATTGGAATATTCCAGTCGCGAATACGACGGCGATTATGTTGGGAATGGGGACTTCCGTTTCTCAGGCCGCAATGCGCGAGTTTGCCCGCGCTGGCGTCATGGTTGGGTTTTGTGGTACGGACGGCACGCCGCTCTATTCGGCCAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 702934-703320 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMA01000001.1 Citrobacter amalonaticus strain S647 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 702934 28 100.0 32 ............................ TAATCTGATGAGGCTTAATCATCTGTTCTTCG 702994 28 100.0 32 ............................ AATGACTGAGGAGCGGAAAAATGGCAACGGAT 703054 28 100.0 32 ............................ TTCGACTTTGCGGATAACGTCGTCTTTGCTGT 703114 28 100.0 32 ............................ AAGACGAACCGTTGCAACTTTTGCAAAATAAC 703174 28 100.0 32 ............................ ATAGCAACAGAATCAGCCTCTAATGCGGCCTG 703234 28 100.0 32 ............................ TCTGTTGCAGTGGACGTATGACGAGGTGGTCG 703294 27 78.6 0 C...........G.......-..G.C.G | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTTAACCGCTGGCCTGGGCTTAGTCTTCGCGCCGGGAAGCATGTACATCGCTGGGTGCTGTTTGGACCGGAAGGCGCAAAAGCTGACGTTCAGTTCACACCCCGGTTTATTACCACTGACATGCTGGCGCTGCGTGAAGCGGCGGTTGCCGGCGTCGGGGTGGTGCAATTGCCGGTGTTGATGGTAAAGGAGCAACTTGCCGCAGGCGAGCTGGTCGCACTACTGGACGGCTGGGAGCCGGGAAGAGAAGTTATCCATGCGGTATTTCCTTCACGGCGAGGGCTATTGCCCTCTGTGCGCACGCTGGTGGATTTCTTAACGGAAGAATATGCGCGTATGGTGGAGGATTAAAAGAGAAAGTGGGATTAACCCTTTTTTGAATGCATAACTTAACGCATTGATTTTAAAGTGGTTTTATTTTCGGGCTGAAAAAGGGGGTTGTCAGTGAAATTCTGGACTTTTATCGAAAAATCAAAAAGGTAGTCTGTTATTATTTCA # Right flank : GTAAAATTTGAGGTACAAAAAAGGCCGGAAGAACCGACCTTTTACTATCTGTACGCCATTCGGGCGTGAAAACAAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATATAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGCACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTTAATAAGTAAAGATTTGTGCGTTTAAAACGCAGCAAATGAAATTTGGCGCATTACTCCGAAATTCTCCAAAAGCACACGGCAAAGCCGCACTTGAAGCGCAACGTATTAAGGGAGCGATGAGATAAACGATGGCGTTACCTGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //