Array 1 9386-10380 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNN01000027.1 Corynebacterium bovis strain 17-0240 - SMALL 27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 9386 29 100.0 32 ............................. ATCTGGGACGTCGCCGCCCGCAGATCATTCGT 9447 29 100.0 32 ............................. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 9508 29 96.6 32 ............C................ GCGGCGGGGGCGATTGGAGCGAGGTAGTGGGA 9569 29 93.1 32 ............C...............T CGAGGGCAGCGTTCGAGTCGATGTCGCCCCTG 9630 29 100.0 32 ............................. CGACTCCGGCCACGCCACACGAGCACTGTCGA 9691 29 96.6 32 ............................T CGGCACCGACGCCTGTGACAGCTGGAGAGCGT 9752 29 96.6 32 .....T....................... GAGGCGTGCTTCGTGTCGTTCAGGGCGGCGGG 9813 29 96.6 33 ............................T CACCCGCGGAGTCACGTTCCTCCCCCCCACTGG 9875 29 100.0 32 ............................. TCGGCGAGCTGCTGTGCACGGTCGGTGGGGGA 9936 29 93.1 32 .C..........................G TTCCCGTCGCCGCCGTAGCCAGTGGTGAACAG 9997 29 89.7 33 A......G....................T CGACGAGAAGACATGGTACGGACACCCCATACC 10059 29 100.0 32 ............................. CCGTCACCCCAGCACGCCAACAGCACCGCCGC 10120 29 93.1 32 ................T...........G CCCCAGAACTCCCACTCGTTGTGGGTGAACGC 10181 28 79.3 82 ...........CC.G.......C..-..T GTGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGAAGGGAGGACGACCCGCTAGACTGCAGACACTG 10291 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 10352 28 93.1 0 ...........-................A | C [10367] ========== ====== ====== ====== ============================= ================================================================================== ================== 16 29 95.1 36 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCCGAGGACGGGGCCGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGTCCCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAACGGGTGCGTGGTCACCTCACGCGCTGGCTCTCAGAAGTGGCGACAGGAGTGTATGTCGGCTAGGTGAGTGCCCGCGTGCGGGATGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACATACCCGACCACCACCTGTGAGCAGGGGTATGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCGGTGACCGGACATCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAAGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTACCATCCCTGGTCAGGAAGT # Right flank : ACCCCCCCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCACCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGTCTCTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGTCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGACTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGAC # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //