Array 1 204365-205490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWII01000005.1 Salmonella enterica subsp. enterica serovar Tennessee strain FCC0087 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204365 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 204426 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 204487 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 204548 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 204609 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 204670 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 204731 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 204792 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 204853 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 204914 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 204975 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 205036 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 205097 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 205158 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 205219 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 205280 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 205341 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 205402 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 205463 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222114-225377 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWII01000005.1 Salmonella enterica subsp. enterica serovar Tennessee strain FCC0087 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222114 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 222175 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 222236 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 222297 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 222358 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 222419 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 222480 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 222541 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 222602 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 222663 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 222724 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 222785 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 222846 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 222907 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 222968 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 223029 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 223090 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 223151 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 223212 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 223273 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 223334 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 223395 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 223456 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 223517 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 223578 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 223639 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 223700 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 223761 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 223822 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 223883 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 223944 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 224005 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 224066 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 224127 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 224188 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 224249 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 224310 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 224371 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 224432 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 224493 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 224554 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 224615 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 224676 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 224737 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 224798 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 224859 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 224920 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 224981 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 225042 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 225103 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 225164 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 225225 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 225287 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 225348 29 96.6 0 ............T................ | A [225375] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //