Array 1 213-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUA01000084.1 Pectobacterium carotovorum subsp. carotovorum strain LMG 2410 2410gDNA_S136_L001_R2_001_trimmed_contig_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212 29 100.0 32 ............................. CGCAGCATATCTCAGAACAGCCTTTCTCACAT 151 29 100.0 32 ............................. GATCGCTATTCGTCGTCGGCGCAAGGCCGAAA 90 29 100.0 32 ............................. CCCAATTGCGGTTTGCACTGCCTGGATAGCGC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAG # Right flank : G # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-691 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUA01000034.1 Pectobacterium carotovorum subsp. carotovorum strain LMG 2410 2410gDNA_S136_L001_R2_001_trimmed_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52 29 100.0 32 ............................. AGTTCCGCCTCTATCACCGTGATGAAAATGGA 113 29 100.0 32 ............................. TCCATGAACGCGTAGCACTCATCAAATGAGTG 174 29 100.0 32 ............................. CCCTGCGTGGCCACACATTGAATGGCGTCTCA 235 29 100.0 32 ............................. CCCGGCGCAGTTCATCAATAGCGCAGACAATC 296 29 100.0 32 ............................. CGCTCGGAAACCCCACCGGGACATTAGGCGCA 357 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 418 29 100.0 32 ............................. CGAGCTGATTATATGGGCTGGATGATGAATCT 479 29 100.0 33 ............................. GGCTGCGTGGCTTTATGGCGATTGGGACGTTAC 541 29 100.0 32 ............................. TTGGGTCAGTTGGTTTACCGTCGCGCTGACAA 602 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 663 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGCTCAATTGCGGTTTGCACTGCCTGGATAGCGCG # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3448-3903 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUA01000034.1 Pectobacterium carotovorum subsp. carotovorum strain LMG 2410 2410gDNA_S136_L001_R2_001_trimmed_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3448 29 100.0 32 ............................. AGTTTGTCGGATACACATTATATTACGCAGTA 3509 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 3570 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 3631 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 3692 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 3753 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 3814 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 3875 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACTGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACTTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATAGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTTTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCGTCACCGAGAGCCGAAGGGGGAAGTATTCCACCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //