Array 1 233615-235925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYWI010000003.1 Pseudomonas syringae strain CFBP13574 CFBP1357403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233615 28 100.0 32 ............................ AAACTGCCAACCATGACAAGTCCATATCAGAC 233675 28 100.0 33 ............................ CTTCGCCATGGCAACGACTTTGTCGCCAGACGG 233736 28 100.0 32 ............................ TTTGCGCAGAACGGCAAGTTCGCCGTGGCGCC 233796 28 100.0 32 ............................ TGTACGTCGGTGCGCTGGATGCGCAGCGTGAA 233856 28 100.0 32 ............................ ACTGGGGTCGGGGTGATGATTACGCCGAAGTC 233916 28 100.0 32 ............................ CGATCTAGGACGCCATCAAGCGTGATGCTTTC 233976 28 100.0 32 ............................ TCGCAAGCAAACCTGACATCACGATACTGGCG 234036 28 100.0 32 ............................ ATCATGAAGCGCTGAGCGTCGAACAGGGCCAG 234096 28 100.0 32 ............................ GCTCGATCCTGGTAGCGGGCGCGGCGGTCTTC 234156 28 100.0 32 ............................ CGCACGCCGACGCACTGAAAGCGTTTCACCAA 234216 28 100.0 32 ............................ TTGCAGGACGGATCAAGCGCAATCAGCTTTTT 234276 28 100.0 32 ............................ TCGATCCGGGGGAGCCCGTGGCGCCGGACGTA 234336 28 100.0 32 ............................ TGCTCGACGTTGTTCGCACGGCCCTGCAGCAG 234396 28 100.0 32 ............................ CTGCAAGGATACGCGTGTCCAGCGGGTACAAC 234456 28 100.0 32 ............................ TGGAGGCTGATTCGCGGGTAACTGTCGTTTAC 234516 28 100.0 32 ............................ GTTGTGTTCAACGGACAACAGTCCTATTCGAT 234576 28 100.0 32 ............................ TCAATCCAAGCAGCTGCATCGACAAGCGTTAC 234636 28 100.0 32 ............................ AACACCGTGCTCAACGCCGTGATCGGCTCGTT 234696 28 100.0 32 ............................ GGCGACCGAGTCCGCAAACTTGTTCACCGCCC 234756 28 100.0 32 ............................ GGCCAGCGAATTATCGAAGCCCTTCACGCCGC 234816 28 100.0 32 ............................ GCACTGAGCGGGTGCAGCAGCAACTCGCCAGC 234876 28 100.0 32 ............................ ATCCGCCGGAGGGAGTAAAGGAGGCTGGGCCT 234936 28 100.0 32 ............................ TGCATCCGGCGCTGCTCAGCCTCTGCAGCATC 234996 28 100.0 32 ............................ CAACGCCAAGTCGACCATCCGCAAGAAGGGGG 235056 28 100.0 32 ............................ ACGACCTGCCTCAGGTCTGTGACGTCCAGTTC 235116 28 100.0 33 ............................ TGACTGTCTAGTTCGCTCTGGCTCTTTTCTAAT 235177 28 100.0 32 ............................ TTTTTAGGCGGTTTAGCTTTGTGCGTGTCCAG 235237 28 100.0 32 ............................ AGGTCGACGTCGTGACCTGAAGATGGATCGAA 235297 28 100.0 32 ............................ CTCCACCTTACGGTTTCTTCAGGCACTGGCAC 235357 28 100.0 32 ............................ TACCAGGGGCACGTCCGAACGCAACGACGTGA 235417 28 100.0 32 ............................ AAGCCGCCTCAGAATTGGCGTGGCCCCAAACG 235477 28 100.0 32 ............................ CCCATGCCTCGGCGGCAAGGCGTCTGGCTTCT 235537 28 100.0 32 ............................ ATCGACACCAAAGAACTGCGCAAGCTGGCTGA 235597 28 100.0 32 ............................ AACAAGATGCGCGACGAAAGCCGCGAGCAGTT 235657 28 100.0 32 ............................ AATAGGCGGGGCCGTGTGTTACAGGTGGTTAT 235717 28 100.0 32 ............................ TGAGTGGGTCAAACAGCTTGCCCGGCATCGTC 235777 28 100.0 32 ............................ TCATGCGGATAATCATCCAACTGAGGACACCC 235837 28 96.4 33 ...............C............ ATGAAGTCGCAGCGAGCAGGGCCGCAAGAAAAA 235898 28 75.0 0 ..C........C.C........T..GGG | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.3 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GTTTGACGTCGTAACGCACCCCGGTGACCTTTACACCCTGTGCGCGGCACGGCTCGCTTGAGCACAGAAATTCGAAGCGGGTGCGGGGTGGTTCCTGTGAAAAGTATTCACGCCGCGCAGCGACAATCGACAGCTCCTGCTGCAGTTCGACACAAAAGGCGCGGGTGATGGGCTTTGTGGGTTTCATACGATACATCCCTGATGCCGTGTGCGTTGACAGCTTACTGGTTCTCGATATGGGACAAGTGATTTCAAGAGATGATGCATTGAGAGCGAGGGGAGGATAGGCGTTTGATTGCCGGTGCCTGTATCAGGCGTCTTGGACCTCTGGAGTGAGTGGGTTGGTCAACGGCATTTTTGGCGGGTAAGACCCTCTTTTTTGGGATAAAAGCTTGGCCCATATAAATCAAAGGGTTAGGCGTGTAACAGAAAAAAGGGTTAATTAGATGAAAAGGAGTATTTTTTCTTTTAAAACGAGAGGTTGTCGAGCAAAGTGTCTA # Right flank : GGTGCCGACCGGATGAAGGTGGCAGCGTATGAAGCAATATTCATACACCGCCCCATCCTTTACTGAATCACACCACATGCCGCACGATCGCCTCCACCGCCCAAGGGTTTGGGGTGGTCCGAGTGGTTATCGCCGCCTGCATGAATCATCAGTGCGTGTCCCTTGATTTGCGAGAGCTCTTTAATGCGGGGTGCCAGCACCGGGTAGTCGGCCGTGCCGTCTGCGTTCACGTAGATTGCCGGCAAGTCGCCCAAGTGGCCGTCCTTGTCATAAGGTCCCAGATGCTTTCCGGTCTTCTCTGGATCGAAGTGACCGCCTGCCGCCAGCGCGGCAACTTTGGCGCCGTCTTTAGTGCCAGCATCGCAACTGCCATTTTCGTGCACGTGAAAGCCATGCACTCCAGGCGGCAGCCCGGTCAGTTTTGGCGTGAAAACCAAGCCATAAGCCGTTTCTTCGATATTGACGCTACCAATCGATTTCGGCGCTCCGTCGGCACTGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 239703-237512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYWI010000003.1 Pseudomonas syringae strain CFBP13574 CFBP1357403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239702 28 100.0 32 ............................ GCTTTCTAGAAATACATAACGAATTTCTTGCC 239642 28 100.0 32 ............................ GCTAAGCGGCATATGGAAACCACTTGAGCCGT 239582 28 100.0 32 ............................ GCAGCGAAAGCAGAAGTACCGCCCAGGGCTGC 239522 28 100.0 32 ............................ AGTTGCTGGAGTCGAACCGGAACAAGCTACGG 239462 28 100.0 32 ............................ CGCTACCAGGATCGAGCTGCGCAGGCATCGAG 239402 28 100.0 32 ............................ CAGCCCTTTGTCGCTCGCGCCCGGTAGAAGTT 239342 28 100.0 32 ............................ ATTCCCCTGCGCGGTAATGGAGTCGCCGTAGC 239282 28 100.0 32 ............................ TTACACACCAGCGCCCGCTAAAGATCCCAACG 239222 28 100.0 32 ............................ GAGACGATGGCCGAGGGCACAAACAACGCCAA 239162 28 100.0 32 ............................ AAACAGATGATCACGATGCCAGCAACAAAAAA 239102 28 100.0 32 ............................ ACAAAGGCGGAACTTATGGTGCTTCTTCAAGA 239042 28 100.0 32 ............................ TTGCTCAGTACGGACTCCCAGCTTTTACTCGC 238982 28 100.0 32 ............................ TGTCTGGGCATATAGAGAGCCGGGCATAAGTT 238922 28 100.0 32 ............................ CGAGTTCATCGGATCGAGGCGAATTGCATAGA 238862 28 100.0 32 ............................ ATTAGCTGCTGTTCGGTTGCAGGTTGAGCCAA 238802 28 100.0 32 ............................ AAGGAGCGGGACGCGGCTCAGTGATCGAGCCA 238742 28 100.0 32 ............................ AGGATGGTGTTGGACGCCGCGTTGTACAGGTT 238682 28 100.0 32 ............................ TGGCTGGGCAGCGACACAGACCCGCTGCGGCT 238622 28 100.0 32 ............................ AATACGGCCACCGGCCAAACCTGGGCGAGGAC 238562 28 100.0 32 ............................ TTTTGAGGGTAAGGTACACCGTGAAGGTGCAC 238502 28 100.0 32 ............................ ACCCCTTTCCACGAGCCAGGAAAGCCGCCATT 238442 28 100.0 32 ............................ TCCGGCAATCAGCTGCTCGGCAATGCTGCGAA 238382 28 100.0 32 ............................ GTATTTGTCGCGCTCAACCAGCGCCGGGGCGA 238322 28 100.0 32 ............................ CCACCAAGCCTTCTTGATCATCCAGGAAGTCT 238262 28 100.0 32 ............................ ATTACAGGCCGTGCAATCACCTTCGGGACAGG 238202 28 100.0 32 ............................ AGATCGCGAAGCCGAGATAGCCCATGCACATG 238142 28 96.4 33 ...............A............ ATCGATCCGCTTCGACTCTGCCGTCAGTGTCTT 238081 28 100.0 32 ............................ ACACAGGAGCGTCCAGCGCGGCCACCACGGCC 238021 28 100.0 33 ............................ TAACGAGCCTGAAGGCAGTTGCGCGGCCTGTAA 237960 28 100.0 32 ............................ CCACGCGACAACAGGCCAGGTTGAACCAAACG 237900 28 100.0 32 ............................ TGCCGCCCCGGCTGCGCCTGCCGCACCCGCGC 237840 28 100.0 32 ............................ CGAAGGCAAGACCTGCAGCGACTGTGTGCATG 237780 28 100.0 32 ............................ TGTGGAACTGTGTCGATGACAGCGTCACGCTT 237720 28 100.0 32 ............................ AAAGACAAGGCAATGGCAAAACCAATGATTAC 237660 28 100.0 32 ............................ ATGCTGCTGGGGATATGGCTGTTGATCTTGTC 237600 28 92.9 33 ............AC.............. GGTGTTGAGCGGCACGGTCACACACTGATGCGA 237539 28 89.3 0 ................A.....T.A... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.4 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCACTCGATACCCTGCTGGCGCTGAACTGGCTTACGGGGATGCGCGATCATGTGCGGCTGGGCGATCTGAGCAGCGTCCCGCCTGATACTCGCCACCGCGTTGTCAGCCGCGTGCAAACAGACAGCAGCCCTGAGCGCACGCGGCGTCGCCTGATCAAGCGTCATGGCATCACAGAAGAACAGGCCCGCGAGCGCATTCCAGACCATGCGGCCAAGCGTTGTAACCTGCCCTTTGCACAACTGCGCAGCCAGACCACCGGCCAGCATTTTCGCCTGTTCATTCGGCATGGGCCGTTGCTGGACAAGCCTGAACATGGAGCTTTCAACGGCTTCGGCCTGAGCAGCCGTGCAACCGTTCCCTGGTTCTGACCCTCTTTTTCGTAAAGCAAAAGGCCGCTTGTGAAATCAAGGTGTTACGAGCGGTCTTGGAAAAAGGGTTTGAGATGGGTAAGTAGGTATTTTGTTTTTGAAACAAAGCGTTATGAGGGAAAGGCTCTA # Right flank : TAGAGTTACAGCGTAGCTGCAATGCAGCTCCTTCACTGCCGCACGGGCAGCTTTTACTTGCGTCATCCCATCCTTTCATTCTGTACAGACCGCATTAGAGAGGCTACGCGTACAACTCCTCTAGAGCTGTGAGCTCTTGCTCAATAACACTCAGCAAAGCCTCCCATTGTGCTTGAGTACATTGCTGTCCCCCTTTGGCACTGTAAAGAAAATCGACAATTCCTGAGCTGACTCGATCTTTATTGGTCTTCTCGAAAATCTGACGAGTCAATGCATGGACAAGCATATCCAGCTCAGATGCATAATTGATCCACCGCCAGTTGTGCCTCAACACGACTTTATCAATCAGCATGCACTGTTTCCTGAATGCTCGTATGGCCAGGCCTAGAGAGCTGGTACTGAGCTGGGCATTGAGCCGCTCACTGTCAGAGCCCGCTCTTTGTTCCGCATCAGGACCAAAAAACCACTCGCTGAAACCAATTTCGATCTCACGAAAGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 248790-250080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYWI010000003.1 Pseudomonas syringae strain CFBP13574 CFBP1357403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 248790 28 100.0 32 ............................ GGTCGACAGTGTTTTGCGGATCGAGCGCACGC 248850 28 100.0 32 ............................ TTTACAAAACTTTTCAGGCCGCTCATTTCAAG 248910 28 100.0 32 ............................ GGTCATCGACCATCATCAGCGCCCGGTACTGG 248970 28 100.0 34 ............................ CTTGACCGCGCCGGTCATTGCGGCAGGCCGGGCC 249032 28 100.0 32 ............................ TGTGCAGCGGTCAGGACTTGAGCAATGGCAAT 249092 28 100.0 32 ............................ TGCAGGCGGGTGAAGTGGTGAACGGCGTCCAC 249152 28 100.0 33 ............................ CGTCCAAAACGACAACATGCGTGCATGCATGCA 249213 28 100.0 32 ............................ ATTAGAGATGGTGGACCCGGCTGCGCCGGGCA 249273 28 100.0 33 ............................ TGTCATCAGAAAACCTCATTGAGTGTACGTGCA 249334 28 100.0 32 ............................ AAATGAGCGAAAAAACGAACGGCAAAGTGACC 249394 28 100.0 32 ............................ AGAAAAAGCGTAAACGACGAAGTGTCGACCCT 249454 28 100.0 32 ............................ CGTGGTTAACTGGCCGTCGACAGCAACAACTT 249514 28 100.0 32 ............................ ACGCTCGGCGCCGAACTGGACCAGGTCACGTT 249574 28 100.0 32 ............................ ATAAAAAAGGCCGCCCCGGCGGCGTTGTACCG 249634 28 100.0 32 ............................ GCCAAGTTCGCCGAGGAAAACCGGGCAGAACT 249694 28 100.0 32 ............................ CGTAGGGGCAGGGCTGGGCAGCTTCATCGCCC 249754 28 100.0 32 ............................ AATAAAAAAGGCCGCCCCGGCGGCGTTGTACC 249814 28 100.0 32 ............................ TGTATGCGGCCACGAATGGGGAGTCTGTTGCG 249874 28 96.4 32 ....C....................... CTGACACTGAAAAAGGCAGCCAGTACAAACAC 249934 28 89.3 32 ...........C.C..A........... GGTTACCCGCTGGTGACCAGCGAAGCCCTGAC 249994 28 89.3 31 ...T...T..............T..... AGATCCTGTGCTTCTGGAGTGAATCGCCCCT 250053 28 78.6 0 T..G.......CA.G...T......... | ========== ====== ====== ====== ============================ ================================== ================== 22 28 97.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCAAAACCCAACCAGTACACCGGCCTTGGCCAGCTCACGCATGGCGGCCTGAGTCACGGAGGTTCCCGTGCCCAGCAAGACGGTTGTGGTATTGGCAATGGGGATATTCCAATACAGCGACTGTTTGCCTGCATCGGTCACATACTCGACCCGCCCCCCGTTGACCAGCACACGGCAATGCTGCAGGTAATAGATATTGGCGCGCTTGGAATGCAGGATCGTTTTGAGATCCGAGGCTTTGATGTCGTCCATGAGTCATCACTGCTCTTGTAGATAGTCCTTGAGACGCGGGTTATAGCGGAAAGTGATGGCGGTGAGCTATGAGTATTTCTGAAAAGAGTAAGAGGATTTGAGCAGAGTGCGTTGACCCCTTTTTTTGGGTCATCAGGGAGGTGTAATGAAATCAATCGGTTACGCAGGGGGGTGAAAAAAAGGGTGAAATGCTTGTTAGCGGGATATTTTTCTTTAGAAACGAGAGGTTATCCAGCAAAGTGTCTA # Right flank : ATGCAAGACGGTCCCGGCGTGGTTGCCTGCGCTCGACACTATCTTGCAGGTAGCAAAAATCTTGGCGAGCTTCCAGGTGCAATCGATTTTCTTAAGCAGACAAATGCTCAAACAGAATCGTCGCCCCCACGATCATCAACACCACCCCACCCGCAATCTCGGCCCGCTTGCCAACCATCGTCCCCAGCACCCGACCCAGCATCACTCCGATCGTCACCATGATCATGGTGGCCAAACCAATAGCCGCTGCCGCTACCACAATATTCACATCGACAAACGCCAGGCCAACACCGACAGCCAGCGCATCGATGCTCGTCGCAAAGGCCGTGACGGCCAGTACAAGAAACGAATGCTGGCTGGTCTTCTCCTGCTCCTCATCCTCGTCTTTCACGCCGTTGTAGATCATGTGCAGGCCCAGGGCGATCAGCAGCGTGAAGGCGATCCAGTGATCCCAGTCGGCGACCCAGGCGGTGGCAGCCTGGCCGATCGTCCAGCCGACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //