Array 1 1449673-1449339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1449672 29 100.0 32 ............................. CGGGCCAACCCCGCCCGCGAGCACAGCATGAG 1449611 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 1449550 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 1449489 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 1449428 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 1449367 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAATCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1457563-1456865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1457562 29 100.0 32 ............................. AGGCGGTGCTCGAAGGTCGTGAAAACATTGCT 1457501 29 100.0 32 ............................. GGCGGCGCCGCGGGCACCCGCACCCCCTCGAC 1457440 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 1457379 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 1457318 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 1457257 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 1457196 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 1457135 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 1457074 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 1457013 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 1456952 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 1456892 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGCGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCCCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTAGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGGCATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCCGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2140312-2140705 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2140312 28 100.0 33 ............................ CCCGCGAAGCCTTCGCCGAGGCCGAAGGAATCC 2140373 28 100.0 33 ............................ CGGGACCGACGTGGCGCGTGCCGAGGAATTCGA 2140434 28 100.0 33 ............................ CCCCATGACCCCCACCGAGGTCGACGCCGCGTG 2140495 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 2140556 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 2140617 28 100.0 33 ............................ CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 2140678 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CCGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGTCGCCGCCGCTTGTCCTTGGGTATGTTCGCGCTGGCCGTGATCGTGTATCTGGCGATCATCCAGCTCGGTGGTCTGTTGATGACCGCGTTGACCGGTGAGGACGATTTCCTGTCCACGCGCGCGGTGTTCTACGGCATGATCATCCCCCTCGGTATCGCCTTGGTATTCACCTACGGGTTGATTGCCTATCTGGGATGGCTCCACCCGGTCTTGCATGATGATCGCTCGGTCCGGTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2142411-2142866 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2142411 29 96.6 32 ................T............ GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 2142472 29 96.6 32 ................T............ TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 2142533 29 100.0 32 ............................. TGATCCGGGCGATCCTCGACGCCCTCACCGGC 2142594 29 100.0 32 ............................. TGAGCCGCGATACCTATCGAGCTACGTAGCCA 2142655 29 96.6 32 ....................A........ GAGAGTTACTGATCGGGATGACTTGAGGGTGG 2142716 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 2142777 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 2142838 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2153826-2154418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 2153826 29 93.1 32 .......T....G................ AGGTGTCAACCGGGGCACCACACACCACAAGG 2153887 29 96.6 32 ............G................ CGGCCCAATCGGGGCACCCAAGCTGATGTACC 2153948 29 96.6 32 ............G................ GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 2154009 29 96.6 32 ............................T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 2154070 29 100.0 32 ............................. GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 2154131 29 96.6 32 .............G............... GTGAACACGGTGACCGGCCCGTACCGGCTGTT 2154192 29 100.0 32 ............................. GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 2154253 29 96.6 32 .............C............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 2154314 29 93.1 46 ..........T..............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [2154319,2154342] 2154391 28 75.9 0 A.......G..A..T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 10 29 94.5 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2163603-2164667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2163603 28 100.0 33 ............................ CCGCGAGATGCTGGAGCGGCTGATGAAGACCCG 2163664 28 100.0 33 ............................ GGCAATTTTGGTGGCGTGCTCGTAGTAGACCGG 2163725 28 100.0 33 ............................ ACTGTGATTGACAGTGTGGAAATCTACGTATGC 2163786 28 100.0 33 ............................ CGACACGACCCTGCAGCGGATCGTGATCGCCTG 2163847 28 100.0 33 ............................ CCAGCCGCCGCTCATGATCGGCGAGGAACATCA 2163908 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGACCAGGTGGG 2163969 28 100.0 33 ............................ CACGGTCGCCCGAGCGATCAACGAGCTACAGAA 2164030 28 100.0 33 ............................ CGCCTTCGACCCGGCCGACATGACCGCCGCGTC 2164091 28 100.0 33 ............................ CGCAGGCGCGAGCGCAGCTCGCGAACGACGGCG 2164152 28 92.9 33 ..........................AA ACCGGCGTGCGGGAAAAGGTGCAGGCCGTGGTA 2164213 28 100.0 33 ............................ GGCGAGACCCACGGCCGCACCATCGGCATCGGC 2164274 28 100.0 33 ............................ CGGCGGCATCACCCGCACCGTCACCATCCAGCT 2164335 28 100.0 33 ............................ CCTTGACCGGGGTGTTCGCGCGTTCGGCTTCCC 2164396 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 2164457 28 100.0 33 ............................ CCGGTCCTCACCCGTGTCGGGCCCGCGGTACTG 2164518 28 96.4 33 ........G................... CTCGAACGGCAGCGTCCAGAGGTCGCCCTCGGT 2164579 28 100.0 33 ............................ CCAGCCAGCAGCGAATGCGTTGGCGGTCAGCAT 2164640 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGTCGACGTTAGGTAACGACTGCATACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGCGTTCTCGGCGCCCGGTCTCCCGGTCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2278226-2279471 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868939.1 Nocardia farcinica strain NCTC11134 plasmid 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2278226 28 100.0 33 ............................ CCCGCTCCCCCTATCCGGCTGGTAACCGGATTC 2278287 28 100.0 33 ............................ TCCGAGCCCGACCAACCCCAGGTCAGAGGCACA 2278348 28 100.0 33 ............................ CGCATGGACCCCGGCCACATGCGCGGCTTCATA 2278409 28 100.0 33 ............................ CTAGGCGGTCACCGTGTTGCTGGGTTTGAATCG 2278470 28 100.0 33 ............................ CCGAATTGGGTATCGAAATGGTTTGCCACGTCA 2278531 28 100.0 33 ............................ CGCGGTCAGGCTGGTGTTGATCTCGCTGATCTG 2278592 28 100.0 33 ............................ CGCCTGCCTAGGGAGTCCGCCGAACATGACAAC 2278653 28 100.0 30 ............................ CGCCAAACCCACCACCACCACCGCGGCGAC 2278711 28 100.0 33 ............................ CGCCGACTCCTTGGACTCGACGTAGTTCTTCAG 2278772 28 92.9 33 AT.......................... GCCGAGGTCGATTCCGCGGGCGTCGGCGTAGGC 2278833 28 92.9 33 AT.......................... CTGCTCGACACCGCTTCGCGTGAGGCACCAGGC 2278894 28 92.9 33 AT.......................... CTTCCGCTTCTGACGAGCCGAACGCCGCTCGGT 2278955 28 92.9 33 AT.......................... CCCTTCGACCGGTCGGGCGTCGTCCTCGAGGAC 2279016 28 92.9 33 AT.......................... CGGGTTCACGGGCTGGGCGACCGGGAAGCGGTT 2279077 28 92.9 33 AT.......................... CACCGCGCCCCAGACGGACGCCCACACCCAGGA 2279138 28 96.4 33 .T.......................... TCACCCGGTCACCGTCCGCCACTCGGTGACGTA 2279199 28 92.9 33 .T............C............. CTCGCCAGCGTGCCCGCGAAGGTGGCCGATGCG 2279260 28 96.4 33 .T.......................... CGACGTCGAGAAGGCGCAGGCCCAGGTCAACTT 2279321 28 96.4 32 .T.......................... CGCGAACGGGCGCCGCCGTCGTCGGGGAAGAG 2279381 28 96.4 35 .T.......................... CCCGGTACCGCCGCCGCCACCCCCCCGCCCCCGCC 2279444 28 89.3 0 .T............C...........T. | ========== ====== ====== ====== ============================ =================================== ================== 21 28 96.4 33 GCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCGGCGAGGTGCTGAGTGCGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //