Array 1 62116-60623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVJ01000017.1 Escherichia coli strain RiKo 2331/09 RIKO2331_17c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62115 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 62054 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 61993 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 61932 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 61871 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 61810 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 61749 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 61688 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 61627 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 61566 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 61505 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 61444 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 61383 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 61322 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 61261 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 61200 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 61139 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 61078 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 61017 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 60956 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 60895 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 60834 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 60773 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 60712 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 60651 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88943-87816 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCVJ01000017.1 Escherichia coli strain RiKo 2331/09 RIKO2331_17c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88942 29 100.0 32 ............................. CGTCTGAACGCGTGGCCGGTGCTGTTCCGCCA 88881 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 88820 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 88759 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 88698 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 88637 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 88576 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 88515 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 88454 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 88393 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 88332 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 88271 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 88210 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 88149 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 88088 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 88027 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 87966 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 87905 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 87844 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //