Array 1 901787-906212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009512.1 Methanosarcina mazei S-6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 901787 37 100.0 36 ..................................... CTAAATTTCATACTCTTCTTGATTTTGGGAAAGTAA 901860 37 100.0 35 ..................................... ATACAAATAGAGATAGATTAGATAAGTATAATGAT 901932 37 100.0 37 ..................................... ATTTGCATACTTCTCCTACAGTACCGCTTCCGGCAAA 902006 37 100.0 37 ..................................... AAATTGAAACCGCGATAGGCTACGGGTGGATTGAAAA 902080 37 100.0 36 ..................................... GTTATTTTCAGGAGTGGTTTTCGCTGTCCATGTATC 902153 37 100.0 37 ..................................... TATTATATATTACTTTCACGTAGGTAAAATTAGTTAT 902227 37 100.0 36 ..................................... AAAGGAAAAAATTAGTATTGTCTAGGAACTCAATTA 902300 37 100.0 35 ..................................... TTATCCTTCTGAGGATTAGGCTTGTCCCGTATCAC 902372 37 100.0 36 ..................................... ATAATGAAGAAGCACACACGAAAAGGTGTAAGCCAT 902445 37 100.0 35 ..................................... TTAACTTGCCAGACTGAACGCTTATTTCTAGTTCC 902517 37 100.0 32 ..................................... AAAATAGTGCCTACCGTACCGCCCATTGCAGA 902586 37 100.0 36 ..................................... TTAAGATGTGATGGGAACCTGTGATAATTTATTACT 902659 37 100.0 37 ..................................... CTTGATTTTGATCAGGTTGAAGAACCCCATAACGGGT 902733 37 100.0 35 ..................................... TACCTGTCGTGGAATCTGGGAATTCCTGGATTATC 902805 37 100.0 41 ..................................... AATTCCTCGCATAGTGTAGAAAGTGGATTTACTATTACTGT 902883 37 100.0 36 ..................................... TTTTATATATAACGATGTTTTGTCTGGATATTCAGA 902956 37 100.0 35 ..................................... AATAGATACTGTCTTGCTGTGCCTCCTGTAGCTGT 903028 37 100.0 35 ..................................... ATAGATATCGCACGGTATTATGTTAATGGGGAAAA 903100 37 100.0 37 ..................................... ATGGCCGATGTTGGAATGGCAACCGCCGACATGACAG 903174 37 100.0 37 ..................................... GGAGATATTAGCCCAGGTTGGCGAAATGTACGCGTGG 903248 37 100.0 38 ..................................... CGTAATGATTCCGATCTTCAGGCTATTATTTCGGCTGT 903323 37 100.0 36 ..................................... TATTGGAGGGATAAGTGGGGGCATGGTTATTATTCC 903396 37 100.0 38 ..................................... ACCCTCTCAACGCTAACTACTTCCAGGATCTTATCAAG 903471 37 100.0 36 ..................................... CAATCAGGTTATTATTCAGGAGTCGCAGGGAGAAGA 903544 37 100.0 36 ..................................... GAGAATTAACAGACTTTCATATCTATGAATCAGAAA 903617 37 100.0 36 ..................................... CCAAAATCTGAACATTATTATTCTGCTCTGCTGCAT 903690 37 100.0 36 ..................................... TATGGCAGTCTTGCCATCAAACTGCCTCCTTCGGGC 903763 37 100.0 37 ..................................... TTTCATCTGACCACATTTATAAAAAGTATTATTTCTT 903837 37 100.0 37 ..................................... ATTCAGTTGAGGATTCTACAGAACAAAACCCAGTTTG 903911 37 100.0 38 ..................................... ACCCTCTCAACGCTAACTACTTCCAGGATCTTATCAAG 903986 37 100.0 35 ..................................... GTCAATCTCAATGTTGGCACACATTCCGTAGTGAT 904058 37 100.0 35 ..................................... AATGAAACGTCCTTATCTATAGTCTCAACGTCACC 904130 37 100.0 36 ..................................... AAATTGTGACCCCGGTAACAGGAATTGCCCTTGTTT 904203 37 100.0 36 ..................................... TCATTCTCGGGGAAGTCTTCAAGCGAAGCGGGCTTA 904276 37 100.0 36 ..................................... ATATCATGATCAGGATTGTAAACGTCCGGCTTGTAG 904349 37 100.0 36 ..................................... TAAAACATGGTATAATAAAGATCTCAAATTAAGCGA 904422 37 100.0 36 ..................................... TTTTGTATTGTCCTCGTCTCGCGGATCGAATGCGTA 904495 37 100.0 34 ..................................... TTTTCCCTATGTTCTTAAAAAAGTGAGTTGTCAA 904566 37 100.0 33 ..................................... TTAATTTTGCCACGTCATTATATGACTCGGTTC 904636 37 100.0 34 ..................................... GAAACTGACAATAACTACGGAAAGGGCCTGAAAG 904707 37 100.0 36 ..................................... CTGTCCTCCCTCGACTTGTCGAAAACGGCGCAGAGG 904780 37 100.0 37 ..................................... TTTCGGATGTTGAACATAACAAAAGCATTACAGGAAA 904854 37 100.0 37 ..................................... GAACAATAAGTTATGACAGTTTCGATCAAAAAATTAT 904928 37 100.0 36 ..................................... TCCGTAAAAATGGATAGAACTGAAAAAACTGTATGG 905001 37 100.0 36 ..................................... ACATCTACGATTAACTCATCATCTGAAAGCAGCCGC 905074 37 100.0 37 ..................................... TTTCTCCTGGCAGTCTTTTGAACAGTATACATCTGCC 905148 37 100.0 36 ..................................... CAATTTGAAACTACACAGTTCTTAGAACCATCATAC 905221 37 100.0 36 ..................................... TCCATGGTTGAGGATGGGCAGATTAGAAACATAATA 905294 37 100.0 36 ..................................... TTCTCCGACAATTTCAAAGATATCTGAATTTCTGAG 905367 37 100.0 36 ..................................... AGTAAAGGGGTGCTGTACGAGAGGGTAAACGGGAAA 905440 37 100.0 36 ..................................... CCTTGATACTCGGCCTCTTGATCCAAAAAGAAAACA 905513 37 100.0 37 ..................................... TATTTTATTGTAAGGGGTACGGATTCATAAGGGGTAT 905587 37 100.0 37 ..................................... GAATAAACCAAACGTTGTAATCCCCGCATACCAGTAC 905661 37 100.0 35 ..................................... TTGCAATATCCGCGAGAAGAGAGGAATATACTAGG 905733 37 100.0 36 ..................................... CTCTGGAGTCCTCATGGCCACTTACAAGGGAGAATA 905806 37 100.0 36 ..................................... TACAATTCCTTTCCCTAGCGCCGTCTGTATATCCAA 905879 37 100.0 38 ..................................... ACAGGAATTTCAAATAAGCCCTGCCCTCCTACTACATA 905954 37 100.0 36 ..................................... TATATGGTAATGTAGTTTTAGAAACCACAGGAGGAA 906027 37 100.0 38 ..................................... TTGAATTTACTGAAAACTACGAACCGATTGTTTTTAAA 906102 37 100.0 37 ..................................... ATTAAAGTAAAACACGAACGCATGAATGCACTAATAG 906176 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ========================================= ================== 61 37 99.7 36 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : GCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATCTGGAAAACAGGGGAAGATGGAAGCGAAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 1620229-1625486 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009512.1 Methanosarcina mazei S-6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1620229 37 100.0 37 ..................................... ATCTCCACTCCCTAGTTCCAATCTTCCCCCCCGTCGT 1620303 37 100.0 36 ..................................... TTTCTTTTGCAAGTGGTCCTTTGTTTAAGATCGCTG 1620376 37 100.0 35 ..................................... TAGGGAATGTCTATGAAAATCCTGAACTTATTGAG 1620448 37 100.0 34 ..................................... ATTACCATTTTTATTTAATTAGCTATAAGTACTA 1620519 37 100.0 34 ..................................... TAATGGGCGTTTACTGGGTAATAGAGTCCATAAT 1620590 37 100.0 35 ..................................... ACATAAACATAATCACCTAATTTTACTTGTGGGGT 1620662 37 100.0 32 ..................................... TAGATGTTGTCGGGGGAGACATCTATAGCAAT 1620731 37 100.0 34 ..................................... ACTTGCAGTGCAACACAGTATCAGACAACACCAT 1620802 37 100.0 36 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCAACCTCTG 1620875 37 100.0 36 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTG 1620948 37 100.0 35 ..................................... CGAGGTTTCCGGCGGCTGCGCTTGGGCGTTGTTGG 1621020 37 100.0 36 ..................................... TACCAAATTAAAAACGTTGTCATTTTTGCGTTGTCT 1621093 37 100.0 34 ..................................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTT 1621164 37 100.0 35 ..................................... AAAATTCCTGCACTCGCGGGTTGACGGGCTGTATC 1621236 37 100.0 34 ..................................... TGATACGTCTCTGAATACTCTCTCGCGAATTCGT 1621307 37 100.0 36 ..................................... CCGAACAGCATTTCGCCTATTTTCCGGGCTTCTTCG 1621380 37 100.0 36 ..................................... TGAATTCAGCAATGGCTTCATGGGTTTCCCGAAGGG 1621453 37 100.0 36 ..................................... CGCAAACCGTAACCATGTGGTTACGCTGATGCTGTT 1621526 37 100.0 34 ..................................... CTGATTTCGGTTTTCAATTCTTTTTCCCCTTCTT 1621597 37 100.0 35 ..................................... TGAGATAAGCCTCATTCAGGAACGGGTTAAGCTGG 1621669 37 100.0 37 ..................................... AGGGCCTTTGCGATCTCGCTATACTGGCTTATATTAA 1621743 37 100.0 35 ..................................... TCTCCTCTTGCATTTCTGTCTCCTATTTTTTGGCA 1621815 37 100.0 35 ..................................... TGCAATGTCGGGGACCAATCCAGGTCAGCCTCGGT 1621887 37 100.0 35 ..................................... AGGTGTTTCGATGGCTCTGTGTTCGATTGCTGACG 1621959 37 100.0 35 ..................................... CAACAATAGAATCGTGCGCCCTGGCCACGAGGGGG 1622031 37 100.0 35 ..................................... CATTATTCCAGGTGAATGTCATATTTCCATTTGTA 1622103 37 100.0 35 ..................................... CTCATTGTTCCCACGCTCCTGTTTTGGCGTTATAT 1622175 37 100.0 34 ..................................... CATTCCATTTGTTTCCATCCATATCTGTTAATGT 1622246 37 100.0 34 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAAT 1622317 37 100.0 37 ..................................... TTAGCTTGCCATATGCTCTGGCTATTTTTCTTTCCTC 1622391 37 100.0 34 ..................................... CTGCGTAAGGCTCTCTAAGATACAAGCATATTCC 1622462 37 100.0 35 ..................................... CCTGATGTTAGTCTTAAAGTTCGGAGCCACCAACA 1622534 37 100.0 35 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAG 1622606 37 100.0 36 ..................................... AGCTTAAGCTCAGGCGAAGAGCAAATGGTAAGAATG 1622679 37 100.0 37 ..................................... TGGAGATGGGAACCGGAAAGACAAGGACAGCAATCGA 1622753 37 100.0 35 ..................................... TTACGTGATAGATGGGAATCAAACAACCGAGATCA 1622825 37 100.0 35 ..................................... AGAGGATTCAACATTTGATTGATCGTGCTAAATTT 1622897 37 100.0 36 ..................................... CCCATGAATGTCCTCTTAATTGACGTAGATTCGACT 1622970 37 100.0 35 ..................................... TAAATGTGGTCAGATGAAACACATAGCAGGAGTGG 1623042 37 100.0 35 ..................................... TGATTAATTCCCTGCCCTATTCTAACACCTTCTTT 1623114 37 100.0 35 ..................................... TTTCCAAGACGGAGATATCTGGAGAGTTGATAATG 1623186 37 100.0 35 ..................................... GTATTTATGGGCGTTGCTTGCTCCGGTTTTGTACG 1623258 37 100.0 35 ..................................... TGGAGAGAAACGACATCATGACAATAGATCATGAA 1623330 37 100.0 35 ..................................... TCAAACAGTGATTGTACTCTCAGAACCCTTTCAAG 1623402 37 100.0 35 ..................................... GTGATATTGTTTTTGGCATTGTTTTACCTTCACTT 1623474 37 100.0 35 ..................................... TGGTTTTAATCCTATTTGCAACAATTGAAGAATCT 1623546 37 100.0 33 ..................................... ATATCGGCTCGATCTTATAAAATTTATTTTCAA 1623616 37 100.0 35 ..................................... TTAATTCGCTTGCCCCTTCAGAAATCTTAAACTGA 1623688 37 100.0 35 ..................................... AAGGTTCTAATAACCGAAACAAAGCTAGGCAACGT 1623760 37 100.0 37 ..................................... CAGCTTCAATGCCTATGACTCATGAAGAAGCTGAGAA 1623834 37 100.0 36 ..................................... TGTTAGGTTGTCCTATTCGACTCCGTACGCAGCCAA 1623907 37 100.0 35 ..................................... AAAGAGGGATCGAATGAAAATAGCCGGGGTAAAGT 1623979 37 100.0 37 ..................................... GATATACCTTATAGTGTATACGTTAAAGGTACACCGT 1624053 37 100.0 37 ..................................... TAAAGCTTCGCTTAATTTTCCGGACAACCTTCGAAAA 1624127 37 100.0 34 ..................................... TCCGGTTCGCCTGGTCGAACGCGTCGAGCGTCCT 1624198 37 100.0 37 ..................................... AGCGCTAGACCACGCACATATAGTATATCCTTAAAGT 1624272 37 100.0 38 ..................................... AGGATATACTATAAACGACGTACTTTAAGGATATACTA 1624347 37 100.0 38 ..................................... ACTGACTGTTTTCGCGATTGAATACATATACTTACGAA 1624422 37 100.0 36 ..................................... ACTCTAAAAGAACTCGGTTTGATCACGCTGAATCTA 1624495 37 100.0 37 ..................................... GCATTGAAAGCACAATGGGAATCTAAAGCACAAATCA 1624569 37 100.0 36 ..................................... CGATCCTTATATCTCCTGCGTCTGTTGCTGTCATGT 1624642 37 100.0 38 ..................................... TTATCCCTGGAAGATGTAAATCTATTCAGGAGAGTAGA 1624717 37 100.0 34 ..................................... TCGCCCGGCTCCTCCTCCTGCCGCTGTAGTATAA 1624788 37 100.0 38 ..................................... GATACTGGCGTTATACAGTTTTGAAGTTCGAAAATACC 1624863 37 100.0 38 ..................................... TCTGATATAATGAAAAATGCCTTCGAAGATGCAAATAT 1624938 37 100.0 35 ..................................... TTCGCCTCCCTTACTCGACCAATGACACATAAAGC 1625010 37 100.0 37 ..................................... TTGAGAATCCACTGTCAAGATCCTGGCTTTTAGACAA 1625084 37 100.0 35 ..................................... TGAACATATTTTCTTGCCTCTTCTGTTGAATATCC 1625156 37 100.0 36 ..................................... TTGTACCTGTAATTAATGGAATTGGTACATAGCCTT 1625229 37 100.0 37 ..................................... TAGACACGACAGCAGGAAATGTTTATATTTCTAAAGC 1625303 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 1625377 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 1625450 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 73 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATATCGCTGGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGAGAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //