Array 1 243303-241338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKP010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5727 .24936_1_353.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243302 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 243241 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 243180 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 243119 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 243058 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242997 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242936 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242874 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242813 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 242752 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242691 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242630 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242569 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242508 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242447 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242386 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242325 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242264 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242203 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242142 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242081 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242019 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241916 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241855 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241794 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241733 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241672 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241611 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241550 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241489 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241428 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241367 29 96.6 0 A............................ | A [241340] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260927-259434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKP010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5727 .24936_1_353.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260926 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260865 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260804 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260743 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260682 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260621 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260560 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260499 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260438 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260377 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260316 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260255 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 260194 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 260133 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 260072 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 260011 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259949 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259888 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259827 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259766 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259705 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259644 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259583 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259522 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259461 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //