Array 1 12918-13315 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000121.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_276_length_111657_cov_51.754589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12918 29 100.0 32 ............................. CCTCCAGCCCGTCGCCGAGCAGTTCCTCGGCC 12979 29 93.1 32 .........A..................T GCATCTCCGACCGCCCGGATAATGCTTGCCGA 13040 29 100.0 32 ............................. TGGGCCGGAGAGAACGGGTACTGCGTCCGCAA 13101 29 96.6 32 ............................C CTGTGTGATCGGCCTCCCGAACAGCTGAGAGA 13162 28 86.2 33 ...........A.........G.-....C CTGCCGACGCTGGGCTACATGTTCTTGGATTGG 13223 29 79.3 32 A...T.........G......G..T...C CTCAACTCCGGTGACAGAGGCAGTCTCGGTCT 13284 29 79.3 0 ....T...........T....GC.T...C | CC,C [13307,13310] ========== ====== ====== ====== ============================= ================================= ================== 7 29 90.6 32 GTGGGCCCCGCGCGTGCGGGGATGGTCCG # Left flank : CCGCCTTCCGGTCGTACAGTCGGGGCCTATTTGAAGGGGCACTCGCCATCACTGGCCACTGCCCCTCTGGGGCTCGGAGCGCGCCGATCTTGTCAGCGGACAGCATCGGCAGAGCACAACGCGGAACTTCGGCGGGTGTGGCCTTGGGGGGCCTCCCGTGAAGGATCAGGCAAGCGTGCGGCGGCCCCGGAGAGCGTGAGAGCGAGAGCCCGTGCGGTATAGGTCGTCGTCATGCCATGAACCCTCGCCGCTCCCGGTTCTCCGGCCCATCCGGGGAACCGGTGTGCGGGGGTGGGGACAGCCCCCGGGGGATCCCTGACGAGGGCGCCTCCAAGGGGCGGTGTTCATGGGACAGTTGACGGACACGGGCCGCGTTTCCTCACCCGTCCATCAGGCTGCGCCTGGCACCTCTTCACACCGGGAGGCCCGCCCCGATGCCCGACTGCTCGCAAGTAAATGAAAACCGCTACTCCACGATGTGAACGCGCAGGTCAGGAAGG # Right flank : CACGGGCTGCTGGCCACGGAGGTAGACCTGCTGCCACTCCAGCGAGTTCATCTTCAGCGCTGCTACGGCAAGCTCCTGCGCCGAGGCGGTTTTGAGCTTGGCGAGACTGCTGTCGATCCAGGGCTGAACGTTCTGGCAACCCTGCTCGCGGTACTCGACGGCCTGGATGAGGCATTCGAGCTTGTCGGCGTCATGCGCGACGATCACTTCGAGGGAATCGCCGTTCTCGTACTCGTGAACGACTCGCTGCACGCCCGCACGTACCGCCGGGTGAGCGGCGGACACCTGGTCGGCGGTCACCTTCTCGTTCGGCGCGGCCTCCAGATAACGGCGGCCGATATGAGGGATGTCGCTGACGCGGGTCTCCTGTGTGTCGTGAAACAGGCAGAGAAGAGCCACCTTCGCGGGGTCGGCACCTTCCATCATGGCGAGCACCGCACCGATGACTCCGGTCCGGAAAGAATGCTCGGCGATGGTCTCGGGATCCTTGACACCGGCGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGCGTGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16621-17197 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000121.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_276_length_111657_cov_51.754589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16621 29 96.6 32 ............................A TGGGCCGAACGGCGCGCGGACGGTCATGGCCG 16682 29 100.0 32 ............................. CCCTCCCAGGCTGCGAAAGCCTGCCCCCAGTC 16743 29 96.6 32 ............................C CAGGACCCCGCCGCCGGCTATCTCATGGCCCT 16804 29 100.0 32 ............................. CAGTCGCATGCGGCAGACGCGGGCCCGTAGTG 16865 29 96.6 32 ............................C CCGTTCCCGGACCGATCGGCATCCCCGCACAG 16926 29 96.6 32 ............................G GGGCTCGCCGAGGCGGCGCTCGACCTCCAGGC 16987 29 96.6 32 ............................A AGGTTCAGGTCGTTCTCTCGGGCCCGGATGCT 17048 29 96.6 32 ............................G GTCGACCAGGCGCCGGGCGGCGTCACCATCCA 17109 29 86.2 32 ....T........A....A.........G GCCCCGGCGCGGCGGCGGGCGTCCTCATCGAG 17170 28 82.8 0 .............A...-...AC....T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.9 32 GTGGGCCCCGCGCGTGCGGGGGTGGTCCT # Left flank : AGCGCAGCGCTGGACTCCGGGGCCTACTCCGCGACCGCCGGCGCTGCCGCGCTGGCCGGCTTCGACATCGCGGTGATCACTGTGCCGACCCCGTTGCGGGACGGCATGCCCGACCTGACCTACATCGAGTCCTGCGCTCGGACGCTGGGCGAGCACCTTCGCCCCGGTGCGACGGTGGTCCTGGAGTCCACGTCTATCCCGGTCGGCTGCCACTGCGGAAGGTGCGCCGACAACGCCCGGTAGTCCACATGCGCGTTGTGGGCGCAGATCCACGAGCCGCCCAGGAACGTGCAGGGGTAGCCCCCCGGGCAGGGATCCCTGACAGGGGATGCCTCCAAGGGGGCGTATTCATGGGAGAGTTGACGGACAAGGACCGCGTTTCCTCACCCGCTCATCAGACTGCGCCTGACACCTCTTCACACCGGGAGGCCCCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTACTCCGCGATGTGAACGCGCAGGTCAGGAAGG # Right flank : TCGGGCCAGTGTCCGCTACGACTCAGGCTGTCGGCATCAATGTGGCCCTGGGGGGAGACAGGCAAGGCCCTGTCGCTGATCGGGAGCATCAAGCCGGTGCACGAGAGGGTTCTGTCAGGCGCCGCCCGGAACCGGTACGCCATGGACAAGGCGCTCGCGCAGGCGGATGCGAAATTGTGGGACGCGTCGTTGGAGACCCTGGAGGGTGCGCTGCTCGCCGCGCCGCAGTGGGCCCGGCACCAGGTCCTTCCCTCGGTCATGGTGTCGCGTGTCGCCAAGGGCAGTACGACGCGTCTACGGCGGGTTGGCTCTGTACACGAGAGAGAGACAGCAGATGTTCACCACTTCGGGAGGCAGTTCCGAGGGCCGCTGTGCTCGAATTGTTCACGAGCACCGGCAGCACCGGTTGCCGGCGCTCAGTGACGGTAGGCGGCTGTCGCGATCTCGATGAAGGATCGGATCAACGGGTTGGTGTCACCTTCGTTCCACACCGCCACCAC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGCGTGCGGGGGTGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98975-99125 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000151.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_480_length_103356_cov_43.732788, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98975 29 100.0 32 ............................. TGCCCGGGGAGGGGTTCACGATCACTGCCGAC 99036 29 100.0 32 ............................. GTGGCGGATGGTCTGGGTCGCAGCTTCACCGA 99097 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGGTCCCCGCGCGAGCGGGGGTGTCCCG # Left flank : GTCCCGTTCTTCGCGGCGATCGCAGCCGTCGCCCAGGGCCAGACCCTGATCCACGACTGGGTCTACGACAACCGCGCCATCTACCTCACGGACCTCAACCGCCTCGGCGGCCGACTCCAGCTCCTGGACCCCCACCGCGTCCTGGTCGAGGGCCCCACCCGCTGGCGCGCCGCCGAGATGATGTGCCCGCCCGCACTACGCCCCGCCGTGGTGGTGCTCCTGGCGATGATGGCGGCGGAGGGGACCTCCGTGCTCCGCAATGTGTACGTCATCAACCGGGGTTACGAGGAGCTCGCGGAGCGGCTGAACTCGGTGGGGGCGCAGATCGAGATCTTCCGGGATATCTAGGCATCCCCTCTCCACTCCCGCCCATCGCTCAAGGGCGGCCCGATCGGGCCGCCCCGGGCCCTTGGCAGCCCTGCCTCTGACACTATGGAGATGTGGCGACGGCCTATGGTCAGGAAACGGCAAAGGCTCTCTAACGTCACAGCTCAGGAAGT # Right flank : GAGGATCAGTGTCCCGGTCGTTCCTTCAGGCCGGGGACGGCTCGGCATGGATCCGATGGTTAAGCCTGGGGTCGTTCAGCCAGTGCCGCGTCCACGGCCATCTGCCATGGGTACGGACGCCGCTCGCCCGGCTGATTCGGCTCGAACCCGCCGGGGCCGTAGAGCACTGTGACTCCTGCCGCACGAAGAGTCTGGACCGACCGGTCGATCTGCGGGTGGGCGGAGTAGGCCGCGTTGACGCAGGGCATCGCCACCGTGGGGATCCCCTTTCCGATGCCCTCCGCGACCACCCCGACGACGAAGTTCGCGGTGAGGCAGAGCGCCCACGCACTCAGACTGTTCGCGGTCACCGGGGCGAAGAGAATCACGTCAGCCTTCGGCCACACATCCGGCCGACCCGGACGCTTATACCGTGAGCGCACCGGGTACCCGGTCATCTCCTCCAGCACCGGGAGATCCTCACGCAGCCAGTCCGCCGCTGTCGGCGTCAACCCGAGGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37357-36959 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000199.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1085_length_131705_cov_35.645588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================================== ================== 37356 29 86.2 218 A..............A.....A..G.... GTACCGATGCCGTGTCTGTCCTGGCTGGGTCGTGCCTGGTCGTTCGGATGGGCTGGCGGTGACGTCGGTGGCGGGTGTGGGGAACCCGCGGCGCGGCAGCCATGCCGACGGATACGGTGCTACCGAAGCCAGTGACGCCGACCCCGGCACAGGAAGCTGTCGTGAAGCAGGTAAAGGAAAACGGCATGATCGCGTGACAACACCCCAGGTCAGGAAGC 37109 29 96.6 32 ............................C CCGGTCGGCGTCGAGGGATCGACCTTCCTGGA 37048 29 100.0 32 ............................. GTCAGCAACGTGTCGAAGAGGGCGAGCAGCCT 36987 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================================== ================== 4 29 95.7 94 GTCGTCCCCGCCCGCGCGGGGGTCCTTCG # Left flank : GCCGAACAGGCCGCCTGGTTCCGACGCGTCACGGGGGTGCGCGTCGGAAGCAGGCGGTCGCCGGGTCTCTGACCGGTGAGCGGCGGCCTCCCACATGGTCCGCCCGATCAGCGAGACGACAGAGCGCGGCCTCCAGGAGCTGTGCAGCCTGTCCGCGGCCTCCGGTGAGCGAGCCGTCGCTCTTCACCCACATCGGCTGGATGCGGACCGCGCAGCGGAGGGCTGATCTGGGCCGGACTGTCCGTTGCCGCCCGGTGTCCGTCGGCGGCCATGACCTCTGCTCAGCTGGTCCTGAACAGTGATCCCTTCGACGGTCAGGAACCGCTGTCCCTCAGCACGGGATTCAGCCGCGGCAACCAGCCCGCTGTCATGCATCCGGCGTGCAGTCTGTCGACCCCGCGCCCGCGGGGGGAGCTCTCGGTGAATGGCTCGGGCAGCCGGGCAGTGACCGTCGTCGAGAGTAGCTCCATTAATGATGTTCCCTCACTAACTGAGGAAAC # Right flank : CGGGTCTACGGCGTCGGCTCCGCCACCGACAGCGCCCGCTACCGCCTCACCCTCGCCCGCCTCCTCACGGTGCCGGTTCAGTCCGTGGAGGGCCGGGTGACGGCGAGCACGGGGACGCCGCCGCCGTCTGCGCGGCGGCCACCCGCGTCGGCGGGCTCCCGGCCGCGATCCCGCTGCGGGCCGTCCACGAGGAACTGACCGCCCGCCCGCGCCGGATCAACCAGGGGCTGGGCCGGGCCCGCTCCGGCCCGGCCGGGGCCGTCCTCGTCGCTCTGACCGCCGCCCTCGGCCTTACGGACACCGTCACCGAGCTGTCCGTCGTCAACCCCGGCAACACCGCCTGCCGCGGAATGCCGTTGCGGTTCACCGCCGGGGTGCCCACTGTGGTCGATCCCGGACTCGACCCCGTCGCACAACGCCTCCTCAACGACGCGGACTGCAAGCTCCGCGCCGCCCACACCACCGTCCGCCACCACACCGAGACCGAAAAGGACACCGCT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGGTCCTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 107121-106543 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000199.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1085_length_131705_cov_35.645588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107120 29 100.0 32 ............................. GACGCGATCACGGCGGCAGCAGCGCTCGTCGG 107059 29 100.0 32 ............................. CTGGGGGGTGGCACGGTAGGCAAGGAGTACGC 106998 29 96.6 32 ............................T CCGATGTGGTTCACGGGCCGGGCGGGGCCGGC 106937 29 96.6 32 ............................T TCTCCTGTGAGCATCGGTAGAAACGTCTACAT 106876 29 96.6 32 ............................C GGGCGAGGGCCAACTGGACGGTATCCAGGTGC 106815 29 100.0 32 ............................. GAACAGGGTAAATGGGTCGCCCGGGGTCTGGC 106754 29 93.1 32 .....................A......T CTGTGGATGGCGGTGGACGCCCAGGCAGATCT 106693 29 86.2 32 ..C.G........C.......A....... CTGAGCCGGTCCAGCACATGTGCCCGGCCGGC 106632 29 82.8 32 ..C.G.........A......A......C CAGAGGCCGAGCGCACTGTCCGTCGTCGTCAT 106571 29 82.8 0 ..C.G.........A......A..A.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.5 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCG # Left flank : ACGCAGGCTCGTCGCACTGCGAACCGAGACAGCACACGTCACGAACTGACCCCCGAGACCGCCCCGACCTGCCCGCGCGTGGTCCCCGCGCATGCGGGAGCCTGCGGAACGGCCACGTTCATAGATCCCGCCGAGGTGGTCCCCGCGCACACGGGCTCCCTCGTCGCCCCGGGCCCCCCGGCCCCGACAGCACCGAAGAGAGCGAGAGTGAAAGCACGTGCGGCGCAGGTCGTCGTCCCCCCTGAAGCCTCGCCGCTCCTGGTTCTCCGGCCCATCCGGGGAACCGGTGTGCGGGGGCGGGGTAGCCCCCAGGGATCTCTGACAGGGAATGCCCCCAAGGGGTCGTGTCATGGGAGAGTTGACCGACATGGGCCGCGTTTCCTCATCCGCCCCATCAGGCTGCGCCTGACACCTCTTCACACCGGGAGGCCCCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTACTCCGCAATGTGAACGCGCAGGTCAGGAAGG # Right flank : GTACGGCACGCTGGCTCCTGTTGTGGGCACATGGGCCCCGCCCGCGCGGGCTCCCCGCACCGGGCCGAGCCCGCGCCCCCGGGCCCTCCGGGCCCAGGCCCCCACCAGCTCAAGCGTCCCGCCGCCTCAGCACCACCGCGCCCGCCCAGAGCGCCGCGCCCGACCAGAGGGCCAGGACGCCCAGGCCGGCCCAGGGGCCCAGGGAGCCCGTCGGGTCCTGGAGGAGGATCTGCTGGCCCGCGCGGTCCGGGAGGAAGTCCGCCACGCCGCCGTTGTCCTCGATGTCGCCGATGATGAACGACATCATCATCAGGAACGGGATCAGAATGCCCATCACGGCCGGTGCGCTGCGCAGCACCATCCCCAGGCCCGCCGAGAACAGGGTGATCAGCGCCAGATACACCCCGCACCCCACCACCGCGCGCAGCGCGCCCGGGTCGCCGATGCCCACGCCGCGGTCGTCCATGAGGATCTGACCGGCGACGAAGCAGGTCACGCTG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 111876-111543 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000199.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1085_length_131705_cov_35.645588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111875 28 100.0 33 ............................ GCCGCCGTTCATCCCCCAGGTGGGGCCGCCGGG 111814 28 100.0 33 ............................ GGCGTCCACCATGGGCCCAGTGGCGGTCGCTGT 111753 28 100.0 33 ............................ TCGTGACCGTGCGGAACCGCATTTGGACTGCGT 111692 28 100.0 33 ............................ CCACAGGACGGATCCGATGCCGCCGAGGCTGGT 111631 28 89.3 33 ...........C.A.......G...... CGCCCACGTCTACTTCGGACTCGACGGGGGCGA 111570 28 85.7 0 ............TG.......GC..... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : ATCGTCCGCTACTACATCAGCGGGCCGCCGCTCCTGATCGTGACAGCCGTCCAGATCGTCCATATCTGACACCCGCAGGCCCGCCCACACCCGGGCGGGCCTGAGTCGTTCAGGGCTGCCGGGCGAGGAGGTCAACTGCCCGTTCGGCACGGTGTTGGGCGTCGGGGTACCGGGCGAGGCGGACACCCAGGTCCTGGGCGGAGTCGCGGACCCGGTTCCTGAACGCCCTCGGCGGCGTCCAGGAACCGGGCCCAGACTGTGAGGGCGCTGTCGAGGGCGCCCTGGCGGAGGTGGAGGGCATCGAGATGGCCGTCGCCAACCCCGACAGGCCCCTGGCCAGGGGTGCCCCCAAGGTGGCGCGTTCATGGGAGAGTTAACGGACACGGGCCCCGTTTCCTCACCCGTCCACNNNNNNNNNNCACCGGGAGACCCCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCCACTCCACGATGTGAACGCGCAGGTCAGGAAGT # Right flank : GAAGATCAACACCCCCTTCGCCCTACGCGGCGGGGGCGGTCTTGGTTTTGATTGCGCGCAATCTCGCTGACTGGTTCACGCGTTCAGCAACCAGACGCAATCTTTGGGCGCCGGGAAGCCATCCACAGCATCCTGAAGCCCCAACCTCATTCACCGGAGGGCCACATGCCGCTCAGGTTCATTGGCACGACCAGCGACGATGGTGACTGCCCCACTCTCTACGAGATCGAGGGCACAGACGAGATCCTCGTTCAGGGTGACCGGGAGACCGACCCGGGCCATCTCGCGCAGCTCCGTGATGTGAAGGAATCCGAGACGTTCGTCCGGGTTCCGAGAGACCTCCTCGTCCGCTACGCGCCGCGCCTCACCGCGCCTGAGCTGCAACCATTCCCTTCCGTCTCCCACATGTTTCGCGAGTTCCAGCACACAGCCTGGCGGCTGGAGACGCGACGCGGATACGCGTCCGACCGCAAGTCCCCGCTGTGGCAACAGTTCCTCGA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 113811-113293 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000199.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1085_length_131705_cov_35.645588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113810 29 96.6 32 ............................T GGCGTACTGCCCCAGGAAGGCCCCGTTGGTCA 113749 29 100.0 32 ............................. ACAGACACCGCGTTGCGGAGGTTGAGCGGGAG 113688 29 100.0 32 ............................. GGTGATGGAGCGCTCCTCGGCGGACAGATCGA 113627 29 96.6 33 ............................A CAGGTCGAACTTGATGCTCGCCGCGCCGATCGT 113565 29 96.6 32 ............................G TGGGTGGCGTTGCGGCCCGGCCCGGCGGGGAA 113504 29 89.7 32 ....T............A..........G AACGCCGCAGAGGCACGGGTCGACGCAGCAGA 113443 29 93.1 32 ....T.......................G TCGGTGGTGTCCACGGTCAGGACCGGTCCGGG 113382 29 96.6 32 ....T........................ TCGGAGATCGGCAGCGCCAGGCCGGCGCGCAC 113321 29 93.1 0 ....T.......................T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 GTGGGCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ATGTTCTACGCAGAGTCCGCAGCACGGGGGCACCTTGAGCGGGACAGCCGCTTCGTGGGGCCCACGCTTTCGGCCTACTATCAGCTACAGAAGTACGCGCTTCCACAGGCGGACTCTGTGGCCATGATCAATGAGGTACGAAAGGGCACCCCGTGACGACCACGACCGAACCTCTCAACTGGATCAAGTCCTCATACAGCGGCAACGGCGGTCAGTGCGTCGAATGGGCCCCCGCGACCGTGTCCGCTACCGGCGTCGTCCCTGTCCGGGACAGCAAGCGCCCGACCGGACCGGTCCTGATGGTCTCCGCCGACGCATTCGCCGGACTGGTCGTCCTCGCTCAGTCCGCCGAGCTGTAGAGCACGGCCCCGAGCCCCACCGACTCCGCCGCCCATCAGGCTGCGCCTGACACCTCTTCACCCCGGGAGGTCCCGATGCCCAACTGCTCGCAATTGAATGAAAACCGCTACTCCACGATGTAAACGCGCAGGTCAGGAAGT # Right flank : GCCTTTCTGGCATGTGAGGCGCGTTCGTTTCCTGAAGCCGGCACCGTGGGCCTCGTGATGGGGGGCACTCGATCGTGTTGAGGGGGCCTGCTGAGCCGTTCCGGGTTCCCGGCCGGGGCCTACGGTGAAGGACTTCGGTGGTTTTACGGAGGAAGGCGAGGTCCAGGCATGGGGCCGGTGTGGAGCATCCCGCTGGAGCGTGGGCGTGTGGAGGTGCCGTCGAGCATAGGGGGCGTCCGTGCGGGTCTGGAGCCTGAGAGGGCAGCGAAGTTCGATGCCGTTACGGCACGGACCTCGGCGAAGCACCTCGTGTACGTGGTCCTCGACTGGGCCTTGCCGCCCGTGGCGGGGGCGGCGGACGTGCCGGTGGTCCGTCGGCTGAAGGGCGGTGACTTCACCGGGGTCGTGGACGGGGACGGCAATCCGGTCGCCCCTTCGCACCCGCCGCTGGACGAGACAGCGGGCGAGAGTGCGCCCACGGTGTACTCGGCGGGTTTCCC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 119252-118797 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000199.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1085_length_131705_cov_35.645588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 119251 28 100.0 33 ............................ GGTGACTGAGCCTCACCCCGGGGTCGGGACGCC 119190 28 100.0 33 ............................ GCCGAGATTGATTTCTGGGACGACGCCGAGGTT 119129 28 100.0 33 ............................ CTGAACGACCGCCAGCGCCCCGAGCGCCAGCAG 119068 28 100.0 33 ............................ TACGGTGAGCACAGCGATCGACTGGATTGCGAT 119007 28 96.4 33 ..............T............. CCGGCGACCGCCCTGCCATAAGGCAGGACCCCC 118946 28 92.9 33 ..............C......G...... CCCCAGGACGGCGCTCCACCTGATCGGCCACGC 118885 28 96.4 33 .....................G...... CCTGATCGACCCGCTCCAGTCCGTGACGCTGTT 118824 28 92.9 0 ..............T......G...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 33 GTCGGCCCCGCGCGAGCGGGGATGGTCC # Left flank : CCCGCTTCGTCGACTTCGTCTCCGAGAGCATCGCCCGCGCCGCAGACCAGGCCCGCGACATCCTCCACACAAAACCCGACACGACCTCGCACGCCCCGGAGCCGGCTCATCCCTCAACCCAGCTCCCCGGCTGATCGACCGGCGGCCCCCGCCGGAGCCCAGGGGCAGGGAACCAGGGGGTGCCGCCCCCTCTCTCTCCCCTGCCGCCACCGCCTGTACCTGCGCCCCGGGAGCCCGGCCCCGACGAGCGCGTCTGAACTCGCCGCTCCTGGCTCTCCGGCCCATCCGGGGAGCCGGTGTGCGGGAGCGGGGTAACCCCCGGCAGGGAATGCCCCCAAGGTGGCGTAGTCATGGGAGAGTTGCCGGACACGGGCCGCGTTTCCTCACCCGTCCATAAGGCTGCGCCTGGCACCTCTTCACACCGGGAGACCTCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTGCTCCGCGATGTGAACGCGCAGGTCAGGAAGT # Right flank : GGGCCCACTCGTAATCGCACTCGCTCTGGACCCCACTGGACGCGGACGCCAACGCTGGTAACGCCGGGAGAGAGAGGGACAAATGAGTGCGACACCCGCCGTATCAGCGGAGGAGGCCACTGCGGGCGGCGAGGCCGCGCAGGTCCGTCGTGGTGGGCCCGGATGCCAGCAGGTCGGCGATGAGGGTTCTGGTGGCCGGGCGGGCGTGGGTCTCCTCCGGGGCGGAGCGTTCCGCAGCAAGAAGGGTGCGGAGGCAGTCGGTTCGGCGGCCGAGGCGGTGGTAGGTGAAGGCGATATCGCTGAGGGCGCGGGAACGGCGTTCGATGCTGGGGAGGGCTCTGAGGGGAACGGCGCGGGCGGCGTCGAGGGCGGCAAGAGGGTCGCCCGCGTGGTTCTCGGCACTGATCCGGTGGAGTTGGACGGTCAGAGGGCTGAAGGCTGCGTGGTCGGACGGCGGGGAGGTGCCGGTGCCGAGTTCCTTGGCGATGGCGGCGGCTTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108613-109180 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000201.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_1104_length_202762_cov_44.284298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 108613 28 100.0 32 ............................ CTCGCGTCTCTCCTGCCGATCATGGTGGAAGA 108673 28 100.0 32 ............................ GTGCCGTCTCGTACCGTCCCGTCCGCCGGATC 108733 28 100.0 32 ............................ ATCGACAGCCACGATCTGGGCGAGAAGCTGGG 108793 28 100.0 32 ............................ GTGCTGTTCGCGATCGTGGTCACCGCGGTGAT 108853 28 100.0 32 ............................ ATTCGGCGGTCCGACGCTGCCACCAGGGGAGT 108913 28 100.0 32 ............................ GATGCCCGGTCCGTGACGCCTGCATGGAGTGG 108973 28 100.0 32 ............................ TGTCGAGATTCAGAACGGACGGAGCCCCAGTA 109033 28 96.4 32 ....C....................... GCGAGCCTTCACACATCGGGCATGACGGCGTC 109093 28 100.0 32 ............................ GGAGACGACGGCTCCGACCCCGGGGAAGCAGC 109153 28 89.3 0 .................A......G..A | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTGTTCCCCGCGCGGCGGGGGTGGACCG # Left flank : TGGTGCCGCTAGACGGGCTGGTCGCGTCGATGCGGCTGGCGAGGGAGCACAAGTACCGGTTGCTGCTCAAGTTCGTGCAGCGCCTGTTCCAGGCGGGACGGGCCGAGGGGTGGACGGCGGCCGGGGAGTCGTTCCCGGCGCGGCTGGCGTGGGCGCCGCATACGCCGACGGACCGGGCGGCCATGCTGGACGAGGTGGTGACGGCGTACGGGGCGGGTGTGCTGTCGCTGGAGACCGCGGTGGCGATGCTGGTGGACGCGGGCTATCCGATTGATGACGCGTCACAAGAAGTGGCGCGTATCCGGGCAAAGATGATGGAGGAGGCGTGACGTGCTGCGGAGGCGGCGCGGGCCGAGGAACCGGACGTGGGGTGACGTGAACCGTGACGAGGGTCTGGAGTCAGAGACTGTTACACGCGGTGAAGGTTGATCTGACAGGATGGTGGAGCCGCAGCGGGTCAAGGGACAGTAAAGACCTTATGTAGCCGCAGGTGAGAAAGA # Right flank : AGTTCCACCCCCGCCGCACGGTGCCCCGGAGGCGGTCACCGCCAGATGCCTCGGCGGCGCATCAGCTCAATCTGGGGGAGCGTGACCTTCTCCAGGTAGGGGCCGTGGCGGTACGGCGGCCGTTCGGCGTAAAGGTTCTTGGGGTAGATGGGCTTGTCGTAGACGATGCGGTACAGCTCCGTGCGCAGGTCCTTGGCGTTGTTCGTCCAGGCGGCTGTGGTGCGTCGGCGGCGGAGGGCGGCGATGTCGATGGTCGCGGTGACGAAGGTGGCGACGCCTCCGTGGTCGACGCGGCCGGCCGTCTGGCCGAAGGGGTCGGTGATGGTGGACTGGCCGCCGAAGAAGTCGACGCGGTGTCCGTCGCGTCCGGTGTACGCGGCCGGGTTGGGGGCGAGGACGTACATGCCGTTGTCGAGGGCGCGGGCCCGGTTCTGGATCTCGAAGGCCCCAGAGGCGACCCCAGGCAGGGGGTAGCTGGTTCGGTACGCAATCTCGCACCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77033-76699 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000160.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_678_length_143572_cov_46.447254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77032 29 100.0 32 ............................. CGCGGGCAGCAGAACGGGCAGTCCGTACCGCG 76971 29 100.0 32 ............................. GGCCGCGAACACGAATACAGAACAACCCCCAT 76910 29 93.1 32 .C..........................G GGGCGGACCGTGGTACAACCATCGGTCCGCCC 76849 29 96.6 32 ............................G ACCGGCGCGTACGCATCAGAGGCGGCCCGCGA 76788 29 100.0 32 ............................. CCGAACGGGTCGTTCAGTTGCTTCAGCTCTTC 76727 29 82.8 0 .....................G.CCC.G. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCCTTCAGCGTCGCATGCTCCGCCTGCAATCCCGGCGGCGTGTGATTTCGCTGTGCTTTCGTACTGCCCATGTTGACCGCCTACCATCAGCTACAGGCCGAAGCAACGTCTCAAGCGGCATCCGTGGCCGTGATCAACCAGATTCGAAAGGGACTCCTGTGACGACCGATTCCCCTCGATGGTTCAAGTCGTCATACAGTCAGCAGGGGGGCAACTGCGTCGAGTGGGCCCCCGCGACCGTGTCCACTACCGGCGTCGTCCCCGTCCGGGACAGCAAGTGTCCGACCGGACCGGTCCTGATGGTCTCCGCCGACGCGTTCGCCGGACTGGTCGTCCTCGCTCAGTCCGCCGAGCTGTAGAGCACGGCCCTGAGCCCCACCGACTCCGCCGTCCATCAGGCTGCGCCTGGCACCTCTTCGCCCCGGGAGACCTCGATGCCCGACCGCTCGCAAGTGAATGAAAACCGCTACTCCACGATGTAAACGCGCAGGTCAGGAAGT # Right flank : CCGTACGGCGGCGGTTCCATAGCCCGTAAGACTCCGCACCGGCCCGTAACAGCCCAGCACAGAGCCCCAGTCACCCGCTGAGCGCGGCTTCGAGAGTCCCGCCCAGGATCACCGGGGGAGCGCCCCGCGACGCCCGGTGGTGGAGCCCGCTCCACCACCGGGACGGTAGCCCGCTGTCTGGGACCCGCCCCTGGAACTTCCTAGCGTTGCCGGTGCAGCGATCGGCGCTGGTCATCACCGGAGGGGCGCAGGGATGTTCAGGTTGTCACGGCGTGGCGGAGCGGCCCCGGAGGCGGTGGCCGCCCCTGCGGCGGCGCTGACCCTCGACGGGGTCGGCCGGGTCTATGGAGACGGAGACGGAAACGGCGATGGCCCGGTCGCGCTCGACGGGGTGAGCCTGACCGTGCCGCACGGCCGCTTCCTCGCAGTGATGGGCCGCTCCGGATCCGGCAAGTCGACGCTGCTTCAGTGCGCCGCGGGCCTCGACCGGCCCACGACGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78429-77910 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000160.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_678_length_143572_cov_46.447254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 78428 30 100.0 31 .............................. TCAGGTTCATGTGCTGGATCACGCCGCCACC 78367 30 96.7 31 .............................C GTTCAGACAGTCCGCTCTCCTGTCCTCCCAG 78306 30 93.3 31 ............................TG CGAGCCGAGGACTTTCCCCGATCCGGCTTTA 78245 30 96.7 31 .............................G CTCTCCTCGCCGGGGAGCCGCTGCCCGAGGG 78184 30 96.7 31 ............................C. GCGGACACGAACCTCAACGCGACCCTCGCCC 78123 30 100.0 31 .............................. GTCCTCACGATCAGTCCTTTCCAGTGTGGGG 78062 30 93.3 32 ............................CC CCCCGCTTCCGCGACGCCAGCCCGGCGCAGCA 78000 30 96.7 31 .............................G TGGCGCTCGTGGCCTGACCGAGGCGTTTGCT 77939 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================ ================== 9 30 96.7 31 GTGGGCCCCGCGCACGCGGGGGTGGTCCGA # Left flank : GACGCAGGGGAATCTAGACCGTGGGCTGTCATCCGTACTGCCGTTGGTGAAGAACTACCATCAGCTGCAAATCGGAGCAGCCTCCCAGGCAGAGTCCGTTGCCATGATCGAACAGCTACGAAAGGGCATCTTGTGATGGCCAAGACCAACGCCCCCCCGATGCGGTGGGTCAAGTCCTCTTACAGCACTCAGAACGGCGGGGCGTGCGTCGAGTGGGCCCCCGAGCACGCACCCACCACCGGTGTCGTCCCCGTCCGGGACAGCAAGCGCCCGACCGGCCCGGTCCTGATGCTCTCCGGCGACGCGTTCGCTGGACTCGTCGCCCTCGCCCGGTCTGCCGAGCTGTAGAACCTCACGGCCCCGAGTCTCGCCGATTCCAATTCCCCGGAGTCGGCGGGGCTTATGTCACTCGTCACGGACAGCACGAGACCTCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTACTCCGCGATGTGAATGCGCAGTTCAGGAAGG # Right flank : TCCAGCACCCGGAGAACCATCCATCACGGAACGAGGGCAGGCTCATGGCCAACTGCGGCACCTGTGGGGGCCTCGGCCGGATCATCTACAAGGAACCCAACACGGGGAAGATGAAGGACATCTCCTTTGGAGCCTGCGGCGGGAGCGTGCAGGAGTAGGCCCCAACCGCCGTACAGTGACGATCAGTCCAGAAAGAGGGGGCGAGAATGAGCAGCGGCGAAGGCGAGAACGTCAGCGAGTGGGTCAACCCCGAGTACGAAGGGATGATTCGCCACTTCACCGCAGAGGCACAGCACACTGCCCGCCATCGCGGCAATGCGGCGTGCAACACCTGCCACGGCCTCCGCGTGATCGTGATCGTGCACTCGGAGAAGGAGCCCTTCAGCGTCGCATGCTCCGCCTGCAATCCCGGCGGCGTGTGATTTCGCTGTGCTTTCGTACTGCCCATGTTGACCGCCTACCATCAGCTACAGGCCGAAGCAACGTCTCAAGCGGCATCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGCACGCGGGGGTGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 96925-96714 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCLA01000160.1 Streptomyces jumonjinensis strain NRRL 5741 NODE_678_length_143572_cov_46.447254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96924 29 100.0 32 ............................. CGCGGTCCGGCGGGCGATGGCGTCGGCACCAG 96863 29 96.6 32 ............................T GCGCATGTAGAAGGGCATGAAAAAGCCCCGTC 96802 29 100.0 32 ............................. ATGAAGGGCGGCCAGCCGAACCTGGTCATGGT 96741 28 86.2 0 .....................-.C.A..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGGTCCCCGCGCCCGCGGGGATGGTCCG # Left flank : GTCTACACGGAATACCTGCTCCGCAAGGTCCGCCGGTGCCAGCGGCTGTTGGTGCGCGCGAGGCCGGGCACCGCGGCGATGTCCGCCGAGACTTCGCCTCGGAAGGGAGCCGGGCGGTGCCCGGAACAAAGGGGTCCGGCGTACCCCGCCCACGAGTGACCGCTGCCCGGGCCGCGTGCCGGACCGCGCCCGCTGCCGCCTCGGTGGAAGGCTTCGCGCGTACGGGGGCCGGCCCCGGGCAGTCTGTACCGCCGGGCGGCAGCTCACCGAGATAGCGCGGCCGGCCGGGGTGCCCCGTGGCGCTGCTCGTCTGCGGGTGCGGGTTGGCGGTGACGTCGGTGGCGGGTGTGGGAAACCGGCGGCGCGGCCACCATGCCGGCGGATACGGTGCTACTGGCCTGGTGACGCTGACACCGGCACAGCACCAGCACCCGGAGGCTGGCCTGAAGCAAGTAAAGGAAACCGGCATGATCACCTGACAACGCCGCAGGTCAGGAAGT # Right flank : ACGCCGGGGCCCTCTCTAGCCGTGGGAGCGGTTCTTTTCGATAGCGCGGAGTCTCCGCGCCTCGTTGACCTGCGCGCTGATCAGAGAGTCGAACAGAGCTTCCGGATCGCCGTCGGGCCCTGCAGTGGTGGAGAGGAGCGTGGCGATGAGGCTGGCGAGAACGGTGACCAGGTCTGCCGATCTCGCCGGACCGCGGGCTTGCAGCAGCTGCCGCACGGCGTCGTCGATGCGGTCCAGGGTCGCCTCGTCTTTGAGGGCTATGCCGAGCCGCTCCGCGAGGAAGATCCTCACAACCGCCACGCCGTCGCCCAGGGCGAGGTCCACGTTGTAGTCGGTTCGCGCCTTCTCCGCTTCTTTCAGGACGGCTGGCATGGTGAACCGCTTGGGCTCCGCCCACAGCCCGCGCTGCTTCCACTGCTCGTACGGGAGCGGCCCGGCAGCGTCGCGGCGGGCGCGGTGATGGTCGGCTGGGTGGCCGTTGCTGGTGCGGCAGGCGCGCC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //