Array 1 1666932-1656101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013673.1 Bifidobacterium longum strain 35624 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1666931 33 97.0 34 ................................C CTTCCGGGTACTCGTCGCTGATCGCATTGTTGCG 1666864 33 100.0 33 ................................. TCGGCCTCCGATTGGGACAGGCGCCACTGCTCG 1666798 33 97.0 33 ................................G AGTTCGTCGCCGCCGTTCTTGGGCGAGCGGATA 1666732 33 97.0 33 ................................C GTGACGGTGATGATGTCCTGCAGTCCGATACGG 1666666 33 97.0 34 ................................T GCCTGTCCGGCTGGCCGTCATATCGCGCGATGGC 1666599 33 97.0 33 ................................G TGGCTCCGACCGGAGTGGCCTGGACCCCGCCGG 1666533 33 100.0 32 ................................. TCGGCTTCAACGCCGCCGCCAATGCGGCGAAC 1666468 33 97.0 32 ................................C TTATTCGTAGGTTGGGATTCCGATGGCGGTCG 1666403 33 97.0 33 ................................T GACTGGTGTTGTCCTGCCTCCACACCACGTCTA 1666337 33 97.0 36 ................................G TAATCTATGGTGATCCAGGAACTGGTAAATCGACGA 1666268 33 97.0 33 ................................C CGTATAAGCCGTATGAAGTGCCGTCGCCATCTT 1666202 33 97.0 33 ................................T TCGACACCTTGCCGATGTAGGTCGCGGCCGCAT 1666136 33 97.0 33 ................................C TTTCAATGTGATTGGTGATGTTGGTGCCGGCGT 1666070 33 100.0 34 ................................. CCCAGTCATCTATCATGAGTTTTTTGCCGCCGTA 1666003 33 100.0 32 ................................. ACGCAAGCTCACGTAGCAGATGATAGTACATG 1665938 33 97.0 34 ................................T GCGTCGGAGCGGTGGAACACGGTAGCGAGACCCT 1665871 33 100.0 32 ................................. CGTCACCGCCAAGGGTAAGCGCCGAAGCCAAC 1665806 33 97.0 34 ................................C AGCACGACGTCACATTCGGTAGCTGCTATGTGAC 1665739 33 100.0 33 ................................. TGCCGCCCAGTATGCGAGAGCGGCGCGCCACGG 1665673 33 100.0 33 ................................. AGCGCCGTGACCTCTCCTCCGAGATAGCGCATG 1665607 33 100.0 33 ................................. CTACCGGTGTCCAGCCCCTCGGGCAGTGCGAGA 1665541 33 97.0 34 ................................C GTCTCGCTTTCCTGACGGCGCGACAGGAGGGCGC 1665474 33 97.0 34 ................................C ATGCGCCCAGCTTACTTTGGCTAGCCTCGATGCC 1665407 33 100.0 34 ................................. TTACTGCCGACCAGCGTACCAAGCTCACCGTAGA 1665340 33 97.0 33 ................................C ACGGGGCGCATACCCGATATCAACGACAGGAAT 1665274 33 100.0 34 ................................. AGGCGGTTGGAAGTTCCGCAAAAGCCAAGGGAAT 1665207 33 100.0 35 ................................. ATCTCTCGCAGTTCGGGGATAATGATAAGCCCTCA 1665139 33 97.0 37 ................................T CCCTCGTGCTGCAACCTGACGTGAACAGATCGCGCCG 1665069 33 97.0 32 ................................T AGCATGTCGTCAAAAGTCCATTGATAGCCGTT 1665004 33 97.0 34 ................................T TCCGTGATCCGTTCAGGTTGGTTCCGGTCACCGA 1664937 33 97.0 34 ................................C CCAACCACCCGCACGGGTGGTTTTTTATGCCCGA 1664870 33 97.0 33 ................................G GCTGCGATGTGTCTGGCCTTGCATTTGCGGCGG 1664804 33 100.0 33 ................................. ACGAGACCGGCGGAGACCCCGCACAGGCCATCG 1664738 33 97.0 33 ................................C GCTTCCGGGAAGGTCCGCGTCTGGGCCGAACCG 1664672 33 97.0 32 ................................C CCTCCCCCGCCGAGATGACGCGGTGGCGTGAG 1664607 33 97.0 33 ................................T CCTGTGGAGTCGTATCCGCAGTGTCCTGTTGAA 1664541 33 97.0 33 ................................T CGGCATCCCGGCGTCAATCATGCTTGCCGCAGT 1664475 33 97.0 34 ................................G TGTGTGTTCGACGGCGTGGACACGGCCAAGCTCT 1664408 33 100.0 35 ................................. TCTTGGCGGCGTTGATGGCGTCAAGGTCTTTGAAT 1664340 33 97.0 33 ................................T CGTTGGCCTGCGCCACCTCGTCGGAGATGAGCC 1664274 33 97.0 34 ................................T CGTATCATCATACGCGCGTGGCTTATGCCACGCT 1664207 33 97.0 33 ................................G ACCTTGAACTGGTGTCGGAAAAAGACCGTGGGT 1664141 33 100.0 33 ................................. ATCCGTCCATTGTCGCGTCGATTGCCGTCAACG 1664075 33 97.0 32 ................................G CTGAGGATTACGAGAGCTACCCACAGACGTAT 1664010 33 100.0 32 ................................. GACCGTGGAAGCCGCATGGGGCACCAAGCCGA 1663945 33 100.0 33 ................................. TATGTTGTGGTGTTAAAAATGGTGTTTGTTCAT 1663879 33 97.0 33 ................................G GGATGAGGGTGATGGTTGCATCGGTGATTCCTC 1663813 33 100.0 34 ................................. TTGTTGCGCTCAATTGAGCGCACGTCAAGCGGGC 1663746 33 100.0 35 ................................. CTCAGGTCAGCAACACATCCGTCAACGAGACAATC 1663678 33 100.0 34 ................................. CCAGGGAGCCAGAAGACAAAGCTGATCGCCGTCA 1663611 33 97.0 33 ................................C AGTAACGACTGTCGTGAGTTCCGGGTGGCGCGC 1663545 33 100.0 34 ................................. CGCAGATGACCATGCAGCCGCACACCGACATGCT 1663478 33 100.0 34 ................................. CCACGGCGTGGAACGCCTACCCAAGCCACACCGG 1663411 33 97.0 34 ................................G TTGACATAATAATTATAGCTCAATTAAGTAAGTT 1663344 33 97.0 32 ................................T CCACGCACCTCGCCGAAGCCGGAGCCCCGGAA 1663279 33 97.0 32 ................................C CAGATGCTTTGGGCCTCCTTGAGAGACGCGAT 1663214 33 97.0 32 ................................C GTCCGCCAAGCCGACGGGGAACCAGAAGCTGG 1663149 33 97.0 35 ................................C GCGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 1663081 33 97.0 34 ................................C AACCGGCAGTAGGCTGTTGCCGCATCGTGGTATA 1663014 33 100.0 33 ................................. CGCCGGACACGAGGCAGTTGTTGTTGACCTGTC 1662948 33 97.0 34 ................................C TCCACCCAACACACGTCCACGCCCTCGATACTCT 1662881 33 97.0 33 ................................T CGCGTGAGCTGCGCGAAGAAGACCGGCTTATGA 1662815 33 100.0 32 ................................. CGTGAAACAGACCGCGACGGGGGAGCGCAAAC 1662750 33 100.0 34 ................................. TCCAACAGAAAACGCAGGTGACTAATGAGGTGTT 1662683 33 100.0 34 ................................. CGTTTTGGCAGATGCAGGAAGCGTATGTGAGGGG 1662616 33 97.0 34 ................................T TATACCTGATTGCTGTAGTAAGCCGCCAAGAATC 1662549 33 100.0 33 ................................. GCCCGTTCGGCGCGAGGTCGGGGCATGTGGTGT 1662483 33 100.0 33 ................................. TGGCGGAGTGCGAACGGTTGAGCGGCGGTGTGC 1662417 33 100.0 32 ................................. ACGCCGACCAGCAGACCATCTCCGACGTGATG 1662352 33 97.0 32 ................................C AGATCACCCCCGGCAACCCGAACAAGGCCGGT 1662287 33 100.0 34 ................................. CCCTGTCCGCTTGCGGTAGTGATACCGCGAAGTC 1662220 33 97.0 35 ................................G ACTCGCTTGGAGCCTCCAGTAAGCGACGTGGGTTA 1662152 33 97.0 31 ................................C CAATTGGGAATACCTATGATGGAGCCAACAA 1662088 33 100.0 32 ................................. GATGAACCAGCCCGGTGTGATAACCGGGCTGG 1662023 33 97.0 32 ................................G CGATCCAGTGGCAGTGTTTACTGGATGTCACG 1661958 33 97.0 34 ................................G ATAAGCCCGATAAGTTCTTCGCGTAGGGCGGCCA 1661891 33 97.0 35 ................................C ACCTTCGCGAGCATCAACGACGCCGGGATGCCCAA 1661823 33 100.0 33 ................................. GTTATCCAGAACGGCGCGCCCTACTCAGGCGGC 1661757 33 97.0 33 ................................G ACCAGCAGATGAGCACCGTGCAGGCCAACACCG 1661691 33 97.0 33 ................................C TACTGGTATGACCTCCTCGTCGAAGACCACCGA 1661625 33 97.0 33 ................................T CTACTCCCCAATCGGTCGAGAGGTACAGGCGTC 1661559 33 97.0 33 ................................C AGTATTGGACCGCGTATAGTGATAGCCATCAAC 1661493 33 97.0 34 ................................G GCCACTCGCAATGCGTTGCACAGTCGGTCGAACG 1661426 33 97.0 32 ................................G CGGACGACCCGGCCGGCTGGCGGCGCGCGTTC 1661361 33 97.0 33 ................................C TTGACGGGCACAGCGAGGGCGGCAGCCAGACCG 1661295 33 97.0 33 ................................G TTGCTGGTCATGGGTTACTCTTCCTTCTTGCTG 1661229 33 97.0 33 ................................T GGAATACCGACGTGATACTTACCGGCCCCACCA 1661163 33 97.0 33 ................................C GATAGTGTGATGGCACCTGAGAAGGGTGTGTTG 1661097 33 100.0 31 ................................. CGCCACGAAGCCCTCGGCTGCTGGACGAGTG 1661033 33 97.0 34 ................................T GATGAAGGCCACAACAATCTTGGAAAGCCATGAC 1660966 33 97.0 32 ................................T CAAAGTTCGCGGCCGATTCACTCAAGGTAATT 1660901 33 100.0 32 ................................. GCAAGGTCGCGTCCGTCGTCACGTCCAGCCTT 1660836 33 97.0 35 ................................T TCCCGCGAATGGGAGAAACGCGCCAAGGACAACAA 1660768 33 97.0 34 ................................T GCTCGGTGGTCACATATCCCTTGATGTTGCTGGA 1660701 33 97.0 32 ................................C GACACGAACACCCGTTACAGCGCCTACCAGAC 1660636 33 97.0 33 ................................T GGCTGAAATTGAGAGGCCTGGACGGCACCGTGA 1660570 33 100.0 33 ................................. AGACACCCACGGGAATCGTAAAGTCCCAAGCAC 1660504 33 97.0 34 ................................G CCACGATGCTACCCACGCTCAGCATTAACTCCAG 1660437 33 97.0 33 ................................T CTGGCACACAAGACTGTAATGGGTTGAGTGGCG 1660371 33 100.0 33 ................................. CGACCGTGAACCGTGTGGAGAACCGGCCGCAGA 1660305 33 97.0 34 ................................T TGCCGGACACGCCGAACAGCGTGGCGGTGATATC 1660238 33 97.0 31 ................................C CCTGCCCGGTACATGGTGCCGTGACATTGAG 1660174 33 100.0 35 ................................. TCTGTGGCGGCGTGGCCACGGTTTTGGGCCTGATG 1660106 33 100.0 34 ................................. ACAAGAAGGTCATAGAACTGAACCAGAACGGTTT 1660039 33 100.0 32 ................................. AGGCGGGCGACGCCATCAACAGCCCTTGCGTG 1659974 33 97.0 31 ................................C ACGACACCTACGACAACGTGTTTCCCTACGT 1659910 33 97.0 34 ................................T GATGAAGGCTACAACGATCTTGGAAAGCCATGAC 1659843 33 97.0 34 ................................G ACCAGGACGTGACCCGTGCCATCACCCGCGTCAA 1659776 33 97.0 32 ................................G CCGTCGTCGGCAAGATCGACGGCCAGGGCATC 1659711 33 100.0 34 ................................. AGGACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 1659644 33 97.0 32 ................................T TCATGCGCTGCAGTGCCTGGCGTGACATGGCC 1659579 33 97.0 32 ................................C ACGACGACTGCGACTGCCAGATCGTGCCCGAA 1659514 33 100.0 32 ................................. CCATCGTCTTGCAAATGAACACGGCGCGTGAA 1659449 33 97.0 33 ................................T GGAACGGCCAATTGTGGGGCATCAGCAACGCGG 1659383 33 97.0 32 ................................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 1659318 33 97.0 35 ................................T CGGACTGCATGTTCAACAACCTGAGCTTCCGCCCG 1659250 33 100.0 34 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCCTC 1659183 33 97.0 32 ................................C ACTGCGAAGGAGTATTCAAATGAGCAAGACCG 1659118 33 100.0 32 ................................. TCACCACCGAACCATGCCAATACTGCGGCAAC 1659053 33 97.0 34 ................................T GGCTCAGTTGGTAACTCAGATGGACAACGTAGAC 1658986 33 97.0 33 ................................C CCGGCCTTGCTCGCACTATCCGCTGCGGCTTGA 1658920 33 97.0 34 ................................T CGATGTTTGACCCGCGCGTGGTCGGAGAGGCAAG 1658853 33 97.0 33 ................................C TCTTGAACAACTAAAAAAGAAAGAATCGCCCGG 1658787 33 97.0 33 ................................C TCGACAAGGAAGCCGCCAGCAAGAAGGCCGATA 1658721 33 97.0 33 ................................C TCGACAAGGAAGCCGCCAGCAAGAAGGCCGATA 1658655 33 100.0 34 ................................. CGCCAGCAGTCCCGGCATCGCCACGCGGGATCGT 1658588 33 100.0 34 ................................. AGACACCCACGGGAATCGTGAAGTCCCAAGCACC 1658521 33 93.9 33 ........................G.......G CCATTTTCGGCACGCCGGACACGTGGAATCAGC 1658455 33 97.0 32 ................................C CATCGCGCCGGACGGGTGGAAACACAAGGCGG 1658390 33 97.0 34 ................................T GAAGTAGCTTGAGCGTTTGAGCCCTGACCTCCTG 1658323 33 97.0 34 ................................T CATACATCTCTGTAATCTGATCGACCATAGGTTT 1658256 33 97.0 34 ................................G GTGTCGGTTACGCCTAATGCTGTGAGATTTTTGG 1658189 33 97.0 33 ................................T TGATCGCCGGCACCCAGATGGTGGTGATGTTGC 1658123 33 100.0 35 ................................. TCCCCGTGGACAACCGCGAGGTGGCAGCCGACGAC 1658055 33 100.0 32 ................................. GGCTATTAGGGCTCGTTCCCAGAGGCGTTGCG 1657990 33 100.0 34 ................................. TCATACCACACTCGGTTACAAAAAGTAACCGGCG 1657923 33 97.0 34 ................................G ATTACAATGTTTGGACGCCAAACACGGTAATTAA 1657856 33 97.0 32 ................................T GGACGGGCGCGGGGTCTACCGCCAAGGTGGTG 1657791 33 93.9 34 .........T......................C CCTTGGACGGTCAGGTAAACGGCAAGACCGGTCA 1657724 33 100.0 33 ................................. ACACGTTGGCCTTCATTGAATCGGTGAAGCCCG 1657658 33 97.0 33 ................................G TATACCGTATGTCTTACCTAAACCACGCGCGCC 1657592 33 100.0 34 ................................. TGGTCGGGATGATGGCGTCCATGATGGTGTCGCC 1657525 33 100.0 32 ................................. TCTCTGTAACAAAAATAGAGCGTGTCGCTTGT 1657460 33 97.0 34 ................................T CATTTGGCGGACGCGACGGCGCGAACCAGAAGAT 1657393 33 97.0 33 ................................G GGCTCGTTCCCTTGCGGCTCCTGTGCCTCGTTT 1657327 33 97.0 33 ................................T TCTCGTGGGAGTCCGCCGATCGGGCGTCGCGGG 1657261 33 97.0 34 ................................T CGAAAACGCGCCCCACGGCGGACGTGGTGGGGAA 1657194 33 97.0 33 ................................T GCGGACAATCGACCCGCCTGCAGGACGGTTTCG 1657128 33 97.0 32 ................................T TCCGTTCGCTCGGCCGAATCCTCCTGGGCATG 1657063 33 100.0 32 ................................. CCACCTGCTGTACCGTGCCACTGTTCGGGTCA 1656998 33 97.0 36 ................................G CCTATCATAGTGTCGCTGATTAACTGGTTATCTGTA 1656929 33 100.0 33 ................................. ACCGCGTCCGACCGGAACGTGGCCGTGCCGTCG 1656863 33 97.0 32 ................................C GTATCGAACCCGCCAACGGCGTGAATAATCTC 1656798 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 1656732 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 1656666 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 1656597 33 97.0 34 ................................G CCCTAAGCATGGCAAGGCTGATAGTCGCGTGTTG 1656530 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 1656463 33 100.0 33 ................................. ACGATCCTTTAAGGAGGAAACCATGACCGCGCT 1656397 33 100.0 33 ................................. AGCCGCAAGACATCAGCCTAGACGATTATCTAG 1656331 33 100.0 33 ................................. ACTTGCATCATAGGCGTATGCGCTCACACTCGT 1656265 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 1656199 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 1656133 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 164 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTCTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCGTATTATGGAATGCTATGCCCATTCTCGCG # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //