Array 1 1469-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNP01000038.1 Streptococcus alactolyticus strain BL-178-WT-3A seq38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1468 36 100.0 30 .................................... CAGTTGTGAGCGCATTAGCATTGACAATAT 1402 36 100.0 30 .................................... TAATGAATATCTTGTAGAAGCTGAACTTCC 1336 36 100.0 30 .................................... CACCATTCGCCAGCGGGTAACGATTGCTAT 1270 36 100.0 30 .................................... TTGGCTAACTCTGCAACATTGGCTGTCTCT 1204 36 100.0 30 .................................... AATCCAATCGCCACACCCAGACGTCCATTA 1138 36 100.0 31 .................................... AGCGAATGATACAGGTGAATCAGTTAAGATT 1071 36 100.0 30 .................................... TGTGAATTTTAAAAATAAGTTGTCTGTTGT 1005 36 100.0 30 .................................... TAACATCATCTTATCAATGGCTCGAGCGCA 939 36 100.0 30 .................................... GAATATATTTAACGATATTACACCAGTAGC 873 36 100.0 30 .................................... TTTTTCTATTTCTTCCCACCGCATGAAGTT 807 36 100.0 30 .................................... ATCTGATGAAACTGACGGCGCTGGGCATGC 741 36 100.0 30 .................................... TTATGAAGGTTTATACCAAGTGAGCAGTGA 675 36 100.0 30 .................................... ACAAAAAAACTTACTTACATTATACCACAA 609 36 100.0 30 .................................... TGATGATATGTACATACCTAAAGAACATAC 543 36 100.0 30 .................................... TCGTTCATTATCTTCTTCCTCCTCATTTTG 477 36 100.0 30 .................................... AATAATGGTTATAACTATCCTACGCAAGTG 411 36 100.0 30 .................................... TGCTGTATCAATTCCAGACATATCAACTAC 345 36 100.0 30 .................................... TTTGAGCTCCGCAAAGAAACTGGCGATTTT 279 36 100.0 30 .................................... TCAGCAATTTGCGTAAAATATATGAAAAGT 213 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CATTACGATTTTAGAACTCATCAAAGATCTTGGTATTAAAATTGAAACACGAAGTGACACCATCTTTAAAAAATGTTTTGAAATTCTTCAAATTTATCAATATCTTAGCAAAAAGAAATTGTTAGTTTTGGTTAATAGCGGTGCTTATTTGTCGAAAGGTGAAGTAGAGAAGTTGTTAGAGTATATTGAACTGAGTAACCAAACAGTGCTCTTTTTAGAACCACGAAAACTTTATGATTTCCCACAATACATTTTAGATAATGACTATGTTTTACTGGAAGATAAGGGAGAGTCATAAGAATAACAAGGTACCTGGGAAGGTATCTTGTTTTTTTGAACGTAATATAAGTTTAGATGAAAGCATTGTTATATGGACTACTCTTATGATATAATGAGAATGACTAAAATTCGATTTTATGAATGGGATCGTTCGGAGCTGAAGTTTTGCTGTGAACGAATGGTGCGATTACGAAATCTTGTGAGAAAAAGTGGTCCACGAG # Right flank : CCTAATAGCGAAATCAATATAACTTTCAGAGTGTTTTAGAGCTGTGTTGTTTGGCTCTATAATTTCTGTAGTGGGTAAATCCACTGTAGAGATTATGGAGCCTTTTTTAGTGTAGAAAAAAAGTCCCATATGACCTATAATGAAAAGTGCTCAAACTATCATTTTAGAAAGACTCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 116-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNP01000011.1 Streptococcus alactolyticus strain BL-178-WT-3A seq11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116 35 83.3 30 .ACAA.....-C........................ ACGTCGTTAGTAGTTATGAACCAGCGCCAG 181 36 100.0 30 .................................... TATTCAAACATACGGAACACGTCCCTTGAC 247 36 100.0 29 .................................... AAAATCCAGCCTTTTATTTTTTTAAGTTA 312 36 100.0 30 .................................... GTAGCCAACTACTTTATTTTCAACTCGGCA 378 36 100.0 29 .................................... CTGAGTTCATCTGGTTACTCGGTTAGGAA 443 36 91.7 0 .................................GTA | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGTTCAGGAACTTTGAAAACTTTAAAAAACGGATTTTGATTGCATTGAACATAAAGAAAGAGAGGACGAAGTTCGTCCTCTCTAGGTGTTAGCTTTTCATCTACCCACTACAGTTG # Right flank : ATGTGGGACACCTGACATCGAGTATTGAAAATGATATCTTGCGTCCTACATACTTTGATAAAATTCTCCCTAAAACAGGTGCCTTGCCAGTTTTTGTTATGACGTCTAGCGTCAAAAGAGAACTCGACTTAACAAGATACCACTACTTTAACATAAAAGGAAAAGTAGCGAGTGCTTTCTCCTGTCGGGGGATTTTCTCACTACTAATCTTAGTATGTTTTTAACAGAGGAAAAGGCACCATAATTTCTAAAGTGGATTTACCTACTACAGAATTATAGAGCCAGTTTTTATTGTACACTTATCATTGTAAAGTTAAGTGAAAAAGGGCTAAAAAAACCGAAATAACAGGCTTTTTTGGCCTAAGAGGCCTAGAGTTTTTGGTGGAGCTATGATAAAATGGGAGGTGAAGTTCTCGTAAGCGTCTGAGAGCAAATAAAGATAGGAGGAGAGAATGGACGCTTTTCAATACATAAAACCAAAACTGTTTAGCACGCTCAAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3070-1447 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNP01000005.1 Streptococcus alactolyticus strain BL-178-WT-3A seq5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3069 36 100.0 30 .................................... TTGTTGCTTTTGGTGATAATATCGCTAAGC 3003 36 100.0 30 .................................... AAATCTTTGAAATTACAACTTTTCTGGGTA 2937 36 100.0 30 .................................... CGACATCAAAAATGGCTAGTGTTGCTGAAT 2871 36 100.0 30 .................................... TTTCGCTTGCCCATCTTAATTGCGTTTTCT 2805 36 100.0 30 .................................... AAAATTTTAATTTACATTTTAATATTGAAA 2739 36 100.0 30 .................................... ATGATTTTAGATAGGTCAATGCCCTCTGCG 2673 36 100.0 30 .................................... AGTATTTCTTAAGAGAAATGGAGCTCAACT 2607 36 100.0 30 .................................... AAAATTCCAAAAAGAATTAGGAATAAAACT 2541 36 100.0 30 .................................... ATGTGTTATTATAGTATTGTCAAGGAATTA 2475 36 100.0 29 .................................... TCCTATGAGTTTCCTCCGTCGCCCAAGCG 2410 36 100.0 29 .................................... GCTTGTAATGTCTTTGCCGTTTTGCGCCA 2345 36 100.0 29 .................................... TGGAACAAGATACATCAATCGCCCGTGGC 2280 36 100.0 30 .................................... GAATTTTTACAAGCTATTAGATGTTGAAAC 2214 36 100.0 30 .................................... TCACGGGAGGAAAAAGAACGCCGCAAGGTT 2148 36 100.0 30 .................................... TGTAAAACGTGCGGTGGCCAAAGCGCAAAA 2082 36 100.0 30 .................................... GACAGCTAAATTCAATAGCTTATCGGTTGG 2016 36 100.0 30 .................................... TTCTGGAATCGGTAAAGTTGGAGTTGCGCT 1950 36 100.0 31 .................................... ATCAATCAGTTTCCCATTGAAGTTTGGTTCG 1883 36 100.0 30 .................................... ATCAGGTTCATCGCTGAAAGCAAGCTTTTT 1817 36 100.0 30 .................................... GGCAATGACGGTATGAAAGTGCCATTGGTT 1751 36 100.0 31 .................................... CTTGGACTTTTGGGACTAACTGGACAAGTCA 1684 36 100.0 30 .................................... TTTTTTCCTTGATTTTCTGATAAGTTTCTT 1618 36 100.0 30 .................................... TTTGCCGCACTAATGCCACCAGCCTTGATT 1552 36 100.0 30 .................................... ATATAATTATGAGACTAACGAATTTCGGAA 1486 36 83.3 0 ....................T...C..C.AT....G | G,A,AA [1454,1457,1465] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAACCATGATATCGATGAGGTGCGTCGTGCCCAAGTTGCTCTTCGTCGGGCATTGAACCGCATTAACGTGGGAAATAATAAAAAGTAAGAGAAATCTTTACTTTAACCGGCTCTTTGTCAACTGTAGTGGGGTGATGAAAAGCTAACATCGAGAGAGAACCAATTGGTTTTCTCTTTTTTCTACGGTCTGCTAGTGTTAAATGTTTACCTTTTGGTGTATAATAGTCTTGCATCTCAGAGTCCTTCTAATTGTTGTTGTGGTGATTACAATTATATCTCTCTGAGATGTTTTTTGATACACTCAAGTGCTCAAGTGGCTAATTTCATTTTAGAACTTTCAGATATCTTGCTTTTTTAAAATCGCTGTTAGATAAACTGATTTTATGGTATAATGGAAATAATTAAAATTCGATTTTATTAATGGGATCGTTCGGAGCTGAAGTTCTGCTGTGGACGAATGGCGCGATTACGAAATCTTGTGAGAAAAAATGGTCCACGAG # Right flank : CGCTTGTTTTTTTGTTTAGGAAAAATATAAAAGCACAATTGAAAACGATACCATAAACTTGTTTTTTATGTTACAATTAGGGTGGTTTAGGAACGATAAATATTTACTGATTGTAAGAGAGGGGATAAATGGATATGAGAAAAGTCTTTTTATGTTTGTTGGCCTTGTCTTGTGTGGGCTTATCAGCTTGTCATAAGTTCCAATCGCCTCAAACAAATTCCAAAACAACCGTATCTACTACTAGCCAAACGCAAAAAGCATCATCTAGCTCGACTTTCACCTCAACGTCCATCTCAGAAAGTAGCACTCAAACAGAGTTAAGTAGTTCTTCAACACAGTCAATTACTACAGAAACTGAAAGTTTTGATAATCAGACCACACCAAGTAGTAGTCAAGATGAGGCTTCGGTGTCTCAGCCGACTGGAATACAGTTAGAAGAACTAGCTGTGGGCAATTACGCTTCTTTGGCTGGCACATGGACGACTGGAGATGGTTCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //