Array 1 18036-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXE01000040.1 Neisseria meningitidis strain NM1672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18035 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17969 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17903 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17838 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17772 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 17706 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17640 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17574 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17508 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17442 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17376 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17310 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17244 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17178 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17112 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17046 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16980 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 16914 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 16848 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 16782 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //