Array 1 232492-234105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQP01000011.1 Salmonella enterica subsp. enterica serovar Anatum strain CFSAN024763 CFSAN024763_contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232492 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 232553 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 232614 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 232675 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 232736 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 232797 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 232858 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 232919 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 232980 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 233041 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 233102 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 233163 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 233224 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 233285 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 233346 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 233407 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 233468 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 233529 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 233590 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 233651 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 233712 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 233773 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 233834 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233895 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233956 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 234017 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 234078 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //