Array 1 161402-162492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031701.1 Lactobacillus johnsonii strain IDCC9203 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 161402 36 100.0 30 .................................... AGTCGTTAGACGAAAAGGTTTATACCGGAT 161468 36 100.0 30 .................................... CTACACCGTGGCCGTTAACGAAGTTGCCGT 161534 36 100.0 30 .................................... GAACTTCATCTTACGATGCACACCAGCATT 161600 36 100.0 30 .................................... TTCGCTTAATGAAAAATCAAGGCGAAAGCT 161666 36 97.2 30 .............A...................... CACTCGTCTGAGTATGTGAGTGATGGTGTA 161732 36 100.0 30 .................................... ATTTTTAAGTGGCCACGAAAGAGGCCACTA 161798 36 100.0 30 .................................... AGTTGATACCGAATTTGAGGACAAAAAGGC 161864 36 100.0 30 .................................... CACTCGTCTGAGTATGTGAGTGATGGTGTA 161930 36 100.0 30 .................................... ATTTTTAAGTGGCCACGAAAGAGGCCACTA 161996 36 100.0 30 .................................... AAAGGGACGACTTCTTCACTAATCATTATG 162062 36 100.0 30 .................................... TAATATTAAGCTCCCCCGTGCGATTCATAT 162128 36 100.0 30 .................................... ATAATGTTCGAACGGGTTGTAGACGTTCTG 162194 36 100.0 30 .................................... ATAAAAGGCTACTCTCTCGAGTAACCTAAT 162260 36 100.0 30 .................................... TGGATACCAAAGAAATCAACAGCAAATTGC 162326 36 97.2 30 ...........T........................ AAGAGCTAAAGAGTTTAAACGCCAAGCGTA 162392 36 97.2 30 ...........T........................ TCTTGAAACCATTAATACATCACCTTACTT 162458 35 77.8 0 ...........T...........-..TA....CTCT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.2 30 GTTTTAGATGGGTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTTCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : TTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGTTTTGTTGAATTTGGGAATCTTATCTAAATTATCATTTCCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTACTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAAATATTGTTAATTAAAATCTCTAGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGGGGGAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGGTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //