Array 1 382-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPPG01000457.1 Bacillus stratosphericus strain WF06 NODE_457_length_433_cov_1.72876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 381 36 100.0 30 .................................... CTACTGCACATCCCATTAAGAGTAGGCTCA 315 36 100.0 30 .................................... GGAATCGAAAAGCTGATTAAAGGCGTAATC 249 36 100.0 30 .................................... GGTCAGGGTGTCGATAAAAGCGGCCGTTGA 183 36 100.0 30 .................................... AAAACCAGCAAACCAACCATCGCGAAATGA 117 36 100.0 30 .................................... GCAGTAGGTTGCCGTAACGGCAGCCTTTTT 51 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : TTTCATCTCGCAGTGCTACAATCTTGCCGCTACCTTCATGTTTTGGAATTT # Right flank : TTATGAACGACAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 739-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPPG01000105.1 Bacillus stratosphericus strain WF06 NODE_105_length_738_cov_0.743044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 738 28 75.0 30 --------...........G................ AATTGGACTATGGCACTAATCGTTAGTATT 680 36 100.0 30 .................................... CGAACCCTGCTGCGAATGGGTGGGCCGCGA 614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Left flank : | # Right flank : ACCCAAGCAGGGAATCCTTGTTTTATAAGGATTCCCTGCTTTATTTTGCTCTGAAAAACTGTGTCAAAACAGTAAAAGTTGGTCGGCATTCACCTTTTTTTCACGCGGTTTCGGCTCGCCGATCAGCATAATCATGCCTGCAAATTGCTTTTCGGTTACCTCTAAATAGCGAACCTGCCCCTCCTCCGGCAGGTGTGCCTGCAGCCGTTTGTGGTGTTTCTGCAACGCATCTCTGCCGCGTACGATGCGGGAGTAAACAGATAATTGCAGCATTTGGTAGCCGTCTTTTTGCAAAAATTTTCGAAATTGGCTGGCGGCTTTGCGTTTTTCTACGGTGGTGACCGGAAGGTCGAAAAATACGATTAAGCGCATAAACTTGGCCTCACTCATAATCCTGCACCTTTAAAGGAAGCATCTCGGGCAGCTTCAAATTTTTTGAACCGCCGGTTAAGGCCGTCTGAAAAGACTGTACGGTGCGGTCGATGGCAGCCAATAGGGAA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTTTCATCTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 18522-18161 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPPG01000014.1 Bacillus stratosphericus strain WF06 NODE_14_length_65101_cov_8.1846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18521 32 100.0 35 ................................ AATTCACGAGTGAGATCGTTGTTGATCGCATCGAG 18454 32 96.9 35 ..T............................. CAAAACGGCTTGAGCATTGTTTGAACTGTGAACAA 18387 32 96.9 33 ...........T.................... ATTAGAGATAAGATAAACTTTGTACTCTTTTTG 18322 32 100.0 34 ................................ GTGGCGATCCGAATGCCTAATTGCACAGGATCAA 18256 32 96.9 32 ..............A................. GGTGAATGGTGGAAAAGACAGGAAAGCTTGGT 18192 32 68.8 0 ..T......A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 93.2 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGGCGTGGTGAATATTGTTTATGTGACTCTTGTTGTCGCACTCTATATGAGTGTGTGGATTGAAATGGATAATATGGAAAGTTTTACGATTGTTTGCAATGTCGCACTTTATATGAGTGCGTGAATTGAAATACCTTTACGCCATTGATTTTATTGCCGGAAACATGTCGCACTCTACGTGAGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTATTTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTAAATAAATAGATTTCAAACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGCC # Right flank : TTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAATAATCAAAACAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGGTAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTTCGCCCAACATGGAAAGAGGATTTACATTTCACGGCGATGCGCCATTGTCTGAACTTCATTGTAGGC # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19450-18889 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPPG01000014.1 Bacillus stratosphericus strain WF06 NODE_14_length_65101_cov_8.1846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19449 32 100.0 33 ................................ GACTCTCCAACTCACCAATTCCCTCGGCGACTC 19384 32 100.0 35 ................................ GAAAATCGGTCGGATCGACCTTCCAAAAACCATAG 19317 32 100.0 34 ................................ TGTAGTATGATTTACGCCCTGCTGTATCGTATAT 19251 32 100.0 33 ................................ TCAAAATCATTGGTCTTTTAGGTGGCTCAATCA 19186 32 100.0 34 ................................ AATTCAGTTTCAGTGTAGGTTTTGCTTCTTGTGC 19120 32 96.9 35 ........................T....... ATGAATTTCAGTGCCTCTAAAAATCCTGCAATTTT 19053 32 96.9 35 .............C.................. ATGGCGTGGTGAATATTGTTTATGTGACTCTTGTT 18986 32 93.8 34 ...........T.......T............ GGATAATATGGAAAGTTTTACGATTGTTTGCAAT 18920 32 90.6 0 ........T..T...........A........ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGGTGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGCTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAAAAACTTAAGGGTTTTGACGATAATTCCCTAAAATATGTTATATTAGGGCGGAAATCGCA # Right flank : ACCTTTACGCCATTGATTTTATTGCCGGAAACATGTCGCACTCTACGTGAGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTATTTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTAAATAAATAGATTTCAAACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGCCGTCGCACTCTACATGAGTGCGTGGATTGAAATAATTCACGAGTGAGATCGTTGTTGATCGCATCGAGGTTGCACTCTACATGAGTGCGTGGATTGAAATCAAAACGGCTTGAGCATTGTTTGAACTGTGAACA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27357-27059 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPPG01000014.1 Bacillus stratosphericus strain WF06 NODE_14_length_65101_cov_8.1846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27356 32 100.0 34 ................................ ACAACAAAGACTTTTACACCCGCTGGCAGGTCAT 27290 32 100.0 35 ................................ AGATACTCTATAATCCGCATTAACAAATTGTTCTT 27223 32 96.9 35 ...........T.................... GATAATATGTGTTTGTTTCTCTTGTTTGTGTGAAG 27156 32 96.9 34 ...........T.................... TGTTTTGCTTGAGCGTTCGGAAAGTTGAACACAG 27090 32 84.4 0 ..................T...AAT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATTTGCAGCAATGTTAACAGTGATACATCATCAATGTCGCACTCTATATGAGTGCGTGGTTTGAAATAGGTAAATTCCGCTGATTATACGGGCTGTTCTGCGTGGTTTGAAATTAGCCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTGTCAGGAATAAAATTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACATTGCGCTTGATATAGGTGTGAAAAACATAACTGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTACCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAAGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGAGCAGAAATCGCA # Right flank : GATTATGTCTTAAACGGGTATGTCTCAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTTCTTCTTTTTCCTAAATAAACCTAAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAAAAAATGAAGGAGGAAATGGTTTGGGTGAAACGAAGCAAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAGAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTATA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //