Array 1 274838-275719 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOR01000055.1 Salmonella enterica strain NGUA-19_S7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274838 29 96.6 32 ............................T CTCAACCACGCCAACTGAGCAAGATATCCTAG 274899 29 100.0 32 ............................. CTGGTATGCCAACTCTTCCCCGCGCTGCTGGG 274960 29 100.0 32 ............................. TTCGCCTTGTCGGTTTCGTAGGTTTTTTCCTC 275021 29 100.0 32 ............................. TGTGCTGGACAGTACCTACAGTAACTTTGTGG 275082 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 275143 29 100.0 32 ............................. ACGATAGTAAATATCCAAATATAAAATGCCGC 275204 29 100.0 32 ............................. GGAAATTAGCTGGTGAAGTTGAAACCCTTAAT 275265 29 100.0 32 ............................. TTGGCTATGCTGATGACGGTTAGCCACTGGTA 275326 29 100.0 32 ............................. CGCATAGCAGAACTGGAGGCGCGGACGGTGAA 275387 29 100.0 32 ............................. ATTAGCTAACTGAGTGATCGTTAACCCCTTTA 275448 29 100.0 32 ............................. CAACGTTATTGAACAGGGGGCGAAGGCCACTC 275509 29 100.0 32 ............................. CCATGTATTCAGTGTCACCTTTAGCATGAGCA 275570 29 100.0 32 ............................. GCAAACCCGCGCCGGAATATTACGACGCTGAC 275631 29 100.0 32 ............................. CGAGATGTCTCTGTCACTGGCTTTAATCCAGC 275692 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCCGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 284357-285301 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCOR01000055.1 Salmonella enterica strain NGUA-19_S7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284357 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 284418 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGCGCCCATGAGGT 284479 29 100.0 32 ............................. CCTTGCAGTTTCCCAGGTGCTCCGGTATTTGC 284540 29 96.6 32 ............................T TACAAGCCCGATATTAATGCGTTGCTCTATTC 284601 29 100.0 32 ............................. TCTGGGTGCTGATTTATGGAGAGGATCAGCAG 284662 29 100.0 32 ............................. GACGTTACCCAATACATGATCCGGGGAGTTCT 284723 29 100.0 32 ............................. GTATTTACCACGCTGGCATCGGGTAAAAAGAT 284784 29 100.0 32 ............................. CGCCATCACGTTAGTAGCTGCGCCCCCCAAGA 284845 29 100.0 32 ............................. CGCGATATCTTCCCGTGTCACCTCGATGTACT 284906 29 100.0 32 ............................. AACATGATCCGCAACCCGTCGCTGTCAAAAGC 284967 29 100.0 32 ............................. CCCCGTTCTGTTACCCGCGCCCGCTGGGCTGT 285028 29 100.0 32 ............................. GGACGGATATTATCCAGCATTTCAGGGAGTAC 285089 29 100.0 32 ............................. CCCAAAAAATCAGAAAAACAATGATTTTAACC 285150 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 285211 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 285272 29 96.6 0 ............T................ | A [285299] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATATGCAATACTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTCTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGGACTTCGGGACGTGTGGCCAGTGGTTGCTCTAACAGAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //