Array 1 182066-179660 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYAL01000012.1 Klebsiella pneumoniae strain VNMU086 MRSN489775_contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182065 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182004 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 181943 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 181882 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 181820 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 181759 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 181698 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 181637 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 181576 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181515 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181454 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181393 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181332 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181271 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181210 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181149 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181088 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181027 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 180966 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180905 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180844 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180783 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 180722 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180661 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180600 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180539 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180478 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180417 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180356 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180295 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180234 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180173 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180112 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180051 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 179990 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 179929 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 179868 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 179807 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179746 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179688 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1976-1278 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYAL01000026.1 Klebsiella pneumoniae strain VNMU086 MRSN489775_contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1975 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1914 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1853 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 1792 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1731 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1671 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 1610 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [1605] 1548 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1487 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1427 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1366 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1305 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //