Array 1 409015-418446 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYD01000021.1 Brachyspira aalborgi strain PC3997IV PC3997IV_contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 409015 31 100.0 35 ............................... TATAAATTATCGGTTTTTATATAGCTTACACACAT 409081 31 100.0 36 ............................... CAATTCTCCTGGTCTGGTTATATTTGGATTTGAAGG 409148 31 100.0 37 ............................... TGGCTTACTCCAGTGAATCCTAACTGTGTATTATCTG 409216 31 100.0 36 ............................... TTTATAACGCCAGAAGTAATTAGTCCAGCAGTTGAG 409283 31 100.0 36 ............................... AGCGCTTCGCTTTGTTTATTAATTAGGTCTACATTT 409350 31 100.0 36 ............................... AAGTGAGCGTATAATTGTTTTATCTCTTCATCTTTT 409417 31 100.0 36 ............................... AGAAGATGATAAAGTCATCGTAGACGGCTTCATGAC 409484 31 100.0 36 ............................... TCGGATTCGGGGAATAACGGCGTTTTAAAATTAGAA 409551 31 100.0 35 ............................... CATTGTCCATTCTGCCGACTTTTGAGACTGACAAG 409617 31 100.0 37 ............................... TTTTTTAATTCCGTCTCCGCAGTTGCTATTACTTCAC 409685 31 100.0 37 ............................... TTGAATAATGTGTCGTATGTATTTTTTAGCCAGCTTA 409753 31 100.0 36 ............................... TTTTAAGCCGTATCTTTTTTGCATTTTATCATATTT 409820 31 100.0 36 ............................... TGGCTAGCATGTTCGTCAAATCTTTTAGTAATACAC 409887 31 100.0 36 ............................... TTTGTTCTGGGTTTTCGGATTTAGGCATCTCTCTTT 409954 31 100.0 37 ............................... GTCAAGTTCTCGTATTCAGTCAAAAAGCGATAAGCCG 410022 31 100.0 36 ............................... ATAAAAATGGAGGTTTCTTTATGTTCAACAAAATTA 410089 31 100.0 37 ............................... TGATTTATATGCATAAACTTCTATAACTTTATTGCCG 410157 31 100.0 36 ............................... AAAAAATATATTTTGAGAAAATCAAAAAAATTGAAT 410224 31 100.0 36 ............................... AAAAATCATTAAATAAAATTTTAAAAAGATTTGATT 410291 31 100.0 37 ............................... AAACTAAAAAATTGATTATCGCTGTTTGCAATTCCGC 410359 31 100.0 37 ............................... GCTTATCGTATCGTCCGTTTCGTCTATCTTGCGTCCG 410427 31 100.0 36 ............................... GTATACGACTGGCTGCGACATGATATAGATAAAGTA 410494 31 100.0 37 ............................... GCGCGTACGCGTTCTTATTCGTTATATAATATGGTCT 410562 31 100.0 37 ............................... ATTTGAAATCAACTTTTTCATTAAAGAAGTAAGAAGA 410630 31 100.0 35 ............................... GCTCTTTTATATCTGAGAGTGCAGTTTAAATTAAT 410696 31 100.0 37 ............................... CAAAAACCTGGCGGGCAAGAAAAAGAACTTGCGAAAT 410764 31 100.0 36 ............................... GTGTTAGGCGAACCTCAGGCAATACCTATATCTGGG 410831 31 100.0 36 ............................... AATAATAACAATCCAATAATAAACAACCAAGAAGAT 410898 31 100.0 36 ............................... TTTATATAATATTAAATAAAAAACTGAAAAAATCAA 410965 31 100.0 36 ............................... AACGAATTTCCATATATTTCATTTCTAAAGTGCCAA 411032 31 100.0 36 ............................... TTAAAAAATCTTTGTTTATTATTGGCCTCTTATCTT 411099 31 100.0 36 ............................... TTCGTAAAGTGGAGTGTAGGGCTAGGAAAAGATTGG 411166 31 100.0 36 ............................... CTCTCTACTGCTATGTTTATGTTATGCTGTAATGCT 411233 31 100.0 37 ............................... CTTTTTGATTTTTATGTTTCCCTATATATATATAATC 411301 31 100.0 36 ............................... AACGGAATTGGGTATTGTAGCGCTTCGTTGCTCGGA 411368 31 100.0 36 ............................... TATCAAAAACTGACTTCTTTCTATAGTATCGTCTAC 411435 31 100.0 36 ............................... AAATCTGTTGATGATAATTGCGGAGCCTCTCCTTGA 411502 31 100.0 36 ............................... CGATATTGTTCATTATCGTGTTTTTTGCTCTTCTGT 411569 31 100.0 37 ............................... GCCGTTCTAGCTATCATTCCTGCATCTCCCATTTTTA 411637 31 100.0 36 ............................... TACAGGTTGTTTGTTTTTATATACATTAATTTCATA 411704 31 100.0 36 ............................... TCGTTCGGAACGGCAGATTGAGGCATATCGTAAAAA 411771 31 100.0 36 ............................... TTCAAATGGTCAACTGAACCAAATAACAGACAACCT 411838 31 100.0 36 ............................... ATGAAGTTCTAATTAATGAACCCTCTCTTTTATCTA 411905 31 100.0 36 ............................... ATAAGTTAAAAAAGATTTTAAGATACAATATGGCAA 411972 31 100.0 36 ............................... CCTTGCATACCATATTCAATTCCCATAGCTGAAAGC 412039 31 100.0 37 ............................... ATGGCAGGAATGGGAGGAGGTGGAAATGAACAGGATT 412107 31 100.0 36 ............................... AATGAAATAAAAAAGGTAAAATATTTTTTTAATTTT 412174 31 100.0 38 ............................... CCAGCTATTAAAGCGCCTTTTCCTATTTTTTTAGATAA 412243 31 100.0 35 ............................... GCAAGCAGCAATAACGAAGATTTATTAAGAATAGG 412309 31 100.0 35 ............................... GTAGATGCGCCGCCTGTTGCGTCTGCTGCAAGTGG 412375 31 100.0 37 ............................... CCCAAATATTTTGGTCGTCCGAGTGTTTCGTCTGATG 412443 31 100.0 36 ............................... AAATGGATGCGTTCTCGATACTTGGATGCATAAGTC 412510 31 100.0 35 ............................... AACGAAAAAAGATAATTGAAGATACTCAAAAAGAA 412576 31 100.0 37 ............................... GCAATTGCGGGAATTGGAGCGGACGGCAACGGCTCGA 412644 31 100.0 37 ............................... AGCGGAGCGAACAAAGGAAAATTATGGAAAGATTTGG 412712 31 100.0 36 ............................... TAATATATTTTAGCACTGTATTTGAAATCTACTCTA 412779 31 100.0 36 ............................... GCTCTTTTATATTTGAGAGCGCAGTTTAAATTAATG 412846 31 100.0 35 ............................... CTTTTTTATTTAGAGATGTTATTAATCTATTCAAA 412912 31 100.0 36 ............................... TCTATCACTTTTACTTGAACGCTATTATTATTTAAT 412979 31 100.0 37 ............................... GAAAATTATAACGAAAAAAATGCAGGAGAGTTATTTA 413047 31 100.0 36 ............................... GCATATTCCAAATTGATAATAATTATTTTGAGTATC 413114 31 100.0 36 ............................... TCTCGCTATTTTCATTGTCGCTTTTCGATATTCTAA 413181 31 100.0 37 ............................... AATTCTTTAATCGTAATTTATACATTAAAGAAAACGA 413249 31 100.0 35 ............................... TTTTTAACATGTAGTTATGTTTACTTATTATGTAA 413315 31 100.0 35 ............................... GTGCAGGCAAGTATGGATTATCATATTATACAAGG 413381 31 100.0 36 ............................... GTTGTCAATCTTGGCGGTATAACGATAAATGCGGGA 413448 31 100.0 37 ............................... GCAATTGCGGGAATTGGAGCGGACGGCAACGGCTCGA 413516 31 100.0 37 ............................... AAATGGAAAAATCGACAGTTTCGGCAAGAGTAAACGA 413584 31 100.0 36 ............................... TAACATAGGTAGGAACATTTCCCTCATTATGACCAT 413651 31 100.0 36 ............................... CGAATATTTTTTTATAAGTATCTGGAGATAATGCTT 413718 31 100.0 36 ............................... AAAAGATATAAATCTAAAATAAAATTAATCGGCATA 413785 31 100.0 36 ............................... TCTATCAAATCTTTTACTTTATTTAATAAGCTCGTT 413852 31 100.0 36 ............................... TTGCTTGAAAGGTTATAGCTCTTTTAAGCTCTTGCT 413919 31 100.0 36 ............................... AACTTTATATTTTACATTGTAAACCCAAATAAATAA 413986 31 100.0 36 ............................... TCCAAAACTGCAAAGCCTTCAATACTTTTAACTTTC 414053 31 100.0 36 ............................... AATCGTTATCGCTTGTTATCGAACATATTATATCTT 414120 31 100.0 36 ............................... TTCTTAATAAGATAGTTGATAATTTAAAATCTACAT 414187 31 100.0 36 ............................... TATTTACTTTTAAGCCCGAATGCCTTTTGATATTCT 414254 31 100.0 37 ............................... TTCGATTGTATCGTTATAGTATTCTTGTAATCCGTAT 414322 31 100.0 36 ............................... ATTCGGTTCGGGGATAAGGACTTACCTACCATGTGA 414389 31 100.0 37 ............................... TCCAAATTCGATGAAGAGGCATTTTGGGAAGAGACGA 414457 31 100.0 36 ............................... TAAGTTTCAATTCAAACTTTAACAACTTGAAAGCAT 414524 31 100.0 37 ............................... TCTTCATATTCGGCGCTTGCATCGTAAAGCCCTACTG 414592 31 100.0 36 ............................... ATGCAAATGTCATTTTATCAGATAATAAATACTTGC 414659 31 100.0 36 ............................... TTCTCTGTTATGATATACTTATAATTTTCGGGGATT 414726 31 100.0 36 ............................... CTTCGTTATTTAATAATAATCGTAAAGCGATTTTCA 414793 31 100.0 37 ............................... CGCTTTAATAAAGATTTTATTGAGTGTAAACCAGATA 414861 31 100.0 37 ............................... TATTTCAAATATTCCTTTAAGGCATTATTTCCAATGC 414929 31 100.0 35 ............................... TCAAATTCTAACATTACATTTTGTTTAGCTTTATC 414995 31 100.0 36 ............................... AACATTTATTTTAGACAATTCTTTAATCAAACCTGC 415062 31 100.0 36 ............................... TCGTATCGCTTGATACTAAATCGTTATCCAAACTTG 415129 31 100.0 36 ............................... CATTATCGGAACATTCTTTATTATAGTTTGCGTTGT 415196 31 100.0 35 ............................... TAACAATAGCTTTTTTCCAAACTCGACTATTCCAA 415262 31 100.0 36 ............................... CATTATCGGAACATTCTTTATTATAGTTTGCGTTGT 415329 31 100.0 35 ............................... TAACAATAGCTTTTTTCCAAACTCGACTATTCCAA 415395 31 100.0 36 ............................... CATTATCGGAACATTCTTTATTATAGTTTGCGTTGT 415462 31 100.0 35 ............................... TAACAATAGCTTTTTTCCAAACTCGACTATTCCAA 415528 31 100.0 36 ............................... TCTATAAACGGAGTTAACAGTTGGTTTGTAGAGCAT 415595 31 100.0 36 ............................... AAAAACTCTAAATATGTTTTTCTATCCAAATGATTA 415662 31 100.0 36 ............................... TAAATCATAGTCTATTTTAGTTTTAGGTTTATCTTT 415729 31 100.0 37 ............................... CAAAAGTAGGCTTGTTTTTTATTCTTTAGGTTCGTTC 415797 31 100.0 37 ............................... AATTTCCATAATGTTCTTATTTTATGATGTATAAATG 415865 31 100.0 36 ............................... TTTTTATTCCTCCTTATTATTTTTAAATGAGTTATG 415932 31 100.0 37 ............................... TTTTTTAGCTCCGTTTCTGCTGTTGCTATTACTTCAC 416000 31 100.0 36 ............................... AAATAGTACGGTCGCCCTAATGTCTCATCGCTCGGC 416067 31 100.0 36 ............................... TATATTTATCGTATGGAATTGATTTTTTATCTTTTT 416134 31 100.0 37 ............................... AAGGAATTCTGCATAAGTTCAAGATTTGATTTTCCAA 416202 31 100.0 36 ............................... CACAGACTAAAACAACAACAAGAAGAAGAAAAGAGA 416269 31 100.0 36 ............................... TACGGTTAGTGCTCTACTATCTAATGTATCGTTTGT 416336 31 100.0 36 ............................... GCTATCGCACTTGTCAAAGCCGTTACGATTTCTTGT 416403 31 100.0 36 ............................... TGAATTTGTCCCAGATATTAAATCCGAATTTGTCCG 416470 31 100.0 36 ............................... TCCGCTATTCAATTTCACGCTTTTTATTACAGAATA 416537 31 100.0 35 ............................... AAATAAACCAAAATATTATCGTCAAACTTTTCTGT 416603 31 100.0 36 ............................... ATCTAAAACTCTAATAAAAATAGAATTACTATATCT 416670 31 100.0 37 ............................... AGATAAAATATTGGCATAAATCAGGTAAAAGAGGTAA 416738 31 100.0 36 ............................... ATCTTTTCGAGATTCCTAAATTGTTCATTATTTCGT 416805 31 100.0 36 ............................... ACAATCTACTATGTTTTTATGCCAGATTAAGAATTG 416872 31 100.0 36 ............................... AGTTTTAGCAGATTTAAAGTAAGATTCTGGGACTTT 416939 31 100.0 36 ............................... GCATTCGAGTTAGACGAAAACGGAGCATTTAAACAT 417006 31 100.0 37 ............................... TGCGGTAAATGTTTGGCCTGTATTCAATCAAGAGTTA 417074 31 100.0 36 ............................... AGAGAGGATACATTAAAGAGTAAGTATGACTGGGGA 417141 31 100.0 36 ............................... TTTGTTTGTTCCCATCGTCTTACAAATTCGTTTAAT 417208 31 100.0 36 ............................... GATGCTCCTGTTGCTGCTCCTCCTGTCGCGTCCGCT 417275 31 100.0 36 ............................... GGTAATTCTCCTGTTATTGTTATATTATTTGTGAAT 417342 31 100.0 36 ............................... GTGTCAATTGGTTCATAGTCTATGTTTTCCCAACTT 417409 31 100.0 36 ............................... ATTTTTCTTTTCCTGCCTTGATTTTTTTATCAATAG 417476 31 100.0 36 ............................... TTTTGTCGTATTTTTCATTATACATTAAATTAAATA 417543 31 100.0 36 ............................... CTTCTCTTATTCTTGCTTCAGGAGAGTGCGGATACA 417610 31 100.0 36 ............................... AGAATTGACTTCTCTCTATCGTATTATCAACTACTT 417677 31 100.0 37 ............................... CTTCACATTGTTGGTATATTCAGCATATCCACTTAGA 417745 31 100.0 36 ............................... TACATATCTCCTACTCCATCGTTTCCGTTTGCGTTT 417812 31 100.0 36 ............................... AAACGAAAAATTTTTTAGAAGCGCATTTTGAAGCAT 417879 31 100.0 36 ............................... TAATCGTCTGCGGATTATAGATTATTAAAGTCATTC 417946 31 100.0 36 ............................... ATTTGTATTTTTAAAAGGTTCGAGCGGACATATATT 418013 31 100.0 37 ............................... CAACCTCAACTTTACATTTCTGCAGACAAAGAATTAG 418081 31 100.0 36 ............................... TGTGTGTCGCTATTTTCATCGCCGATTTTGTCAAAC 418148 31 100.0 36 ............................... GACGAGTTTACTGCAAGCGTATTTGGAAAAGCTTCG 418215 31 100.0 36 ............................... TTTCTTTAGCAGACAATCGAACTAACGCTTACGCTT 418282 31 100.0 36 ............................... GCGCAGAAAAAAGAGAGTCTAACTCTTTTTTTTCTG 418349 31 96.8 36 .C............................. TCATTAATTTTTTTGACATATCGCGTCTTTTGAAAA 418416 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 141 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : TTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGTAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATATATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGGGAGAAAAAACGGA # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCACTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //