Array 1 1721540-1719409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006713.1 Bifidobacterium breve JCM 7019 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1721539 33 100.0 34 ................................. ACCAGAGCGGCTTGCAGGCCGTCGACCATCGCGT 1721472 33 100.0 36 ................................. CGGCAGCAGCGTGAGAATCAGCCCCACATTCTCTCA 1721403 33 100.0 34 ................................. ATCGTCTTGTGGCAGTGATGGCAGTCGGTCAAAG 1721336 33 100.0 33 ................................. GCCTCGTCGAGCTTCGCTTGGGCGTCAGCCAGC 1721270 33 100.0 36 ................................. CTCATCGGTCGAAGGCTGAGGATTGCACCATTCCTT 1721201 33 100.0 33 ................................. TACGCGCTCGTCACTGGATGGACATGGGGCTAC 1721135 33 100.0 33 ................................. ATGACCTGCAGCGCGCTCGGATTGGAACCGTCC 1721069 33 100.0 35 ................................. TTCTTCGGCTTCGCGGCGTCGGCGGCCGTGCTCGG 1721001 33 100.0 35 ................................. TACGAAGTGAAGTCATGCATGGCTGACTTCACGAG 1720933 33 100.0 34 ................................. ACGATGGCGAAGTCGGCGGTCACTCGGCTTGTGA 1720866 33 100.0 36 ................................. ACGTTCATTCCGAACAAGTCGGGCACCGTCCAATGG 1720797 33 100.0 33 ................................. ATCTACAACGGCACCGGTTACTATTCGCCCTCT 1720731 33 100.0 33 ................................. ACCGGCGCTCTGGCCAACATCAAGGCCGCGCTA 1720665 33 100.0 35 ................................. CCACTACCCTTGACCTCGACGCTGAGGACGAGTTC 1720597 33 100.0 34 ................................. CTAGGCATGCCACCAACTACGCGACAGCGTATCA 1720530 33 100.0 33 ................................. GTTGCCGAAGTCGGTGGGCGACTGCGACCACGG 1720464 33 100.0 35 ................................. GATGCAGTCCATCAGATTGATGAGCAGTTGGGCGC 1720396 33 100.0 36 ................................. CGCAAATTTCATGGTCGCCATCACGTCCGAATGCCA 1720327 33 100.0 36 ................................. TCGATGTGCTCGCGGATCATCGCGACCGCGCTGGCG 1720258 33 97.0 34 ....................T............ GTTGCGCTACTAGCCGCGTCTAACGTGAAGTGAA 1720191 33 100.0 34 ................................. TGCGTGCTGGGTTCGCCGAGCCGGTAGTCGGGGC C [1720181] 1720123 33 100.0 35 ................................. TCCCTTCAGGAACATGCCGGCACCTCCTTCGGCCC 1720055 33 100.0 37 ................................. TGTGTACGGATACATGGCCGTGGCCGCAACGTTCACC 1719985 33 100.0 36 ................................. TGCGAACGCAAGGTAACAAGACAGATCGACGGCAAA 1719916 33 100.0 36 ................................. CCGACCCACTAATCCACTGCAATTATCGGTGACAGT 1719847 33 100.0 35 ................................. GAGGACGCTGTGTGGTGGTGTGCTGACCCAGATTT 1719779 33 100.0 32 ................................. CGTGGAAGGCCGTCCACCTCGGGTCGAGTCGA 1719714 33 100.0 35 ................................. CAGGCCGCACCGAACCTGCAATGCGATGCGTTGGA 1719646 33 100.0 35 ................................. TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1719578 33 97.0 35 ............T.................... CTGTACGGCAAAGCTCAGGCCGGCAGCGAGGGCTG 1719510 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1719441 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 99.3 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAATTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGCTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //