Array 1 1128272-1133461 **** Predicted by CRISPRDetect 2.4 *** >NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1128272 32 100.0 35 ................................ CGGGCGGAGCTTAGCCTCGCCTCGGAGGTTCATAA 1128339 32 100.0 34 ................................ TGTTTAAGCTTGTCCTCTTTCTCCGTCTTCTGGG 1128405 32 100.0 36 ................................ ACCAACAGGGAATTGCCGAGGCATGTATGGTACATT 1128473 32 100.0 34 ................................ GTAAGTATCCCTTTCATGTTTTATCTGGTTTAAG 1128539 32 100.0 35 ................................ GAAGAAAAGAAAATGCATGTACTACGACTTATACC 1128606 32 100.0 34 ................................ TTATAATGTACCGAGACGTTTTGTCTAACTCCCT 1128672 32 100.0 35 ................................ AAGTTACTTGTCATATCTCACCTCCAATATAGTTT 1128739 32 100.0 36 ................................ ATGGAACAAGGAACAGGTAAAAGTAAAACACTCCTT 1128807 32 100.0 35 ................................ ATAATAAAGAACATGCAAGAAAAAGTAACGATAAT 1128874 32 100.0 35 ................................ ATAAATCATAGCCGGACCGTAATCACAACTAACCA 1128941 32 100.0 34 ................................ ACCGTTTTGATGGCGAGCTGTGGGAGTCCATAGG 1129007 32 100.0 35 ................................ GAGAAAAATATCAATAAAGCTTCCACCTAATGCAC 1129074 32 100.0 35 ................................ CCGCTTTTTAATACCGGGAATTCTTTGACGTCCCA 1129141 32 100.0 35 ................................ ATAGCAGACCTTATATTTCCCTGAGTAACAGATTC 1129208 32 100.0 35 ................................ ATCTGTTCATCTAAAAGCCGCTTTACAGACTTCGC 1129275 32 100.0 36 ................................ AACAAGGTTATTCCGGAAAGTAAGTATGAGGAATGG 1129343 32 100.0 34 ................................ GAAAATGCGTTTATTGACCAAGGACCCTCACCTG 1129409 32 100.0 36 ................................ ATGCAAGGCTCGTAGCGGCAAATGTAGACGGGCTGA 1129477 32 100.0 35 ................................ ATCGGAGGATCCCGTACCCCTGTTATTATTTCCGA 1129544 32 100.0 35 ................................ GTAGGCAGGCCCATAAGCTGCCAAACATCAAGATT 1129611 32 100.0 35 ................................ ACCTATTGGTGCTACGCTGGTTAAGTCTGATTTTC 1129678 32 100.0 34 ................................ AAAGGTGGATCCTATTACAATTGGTGCTTTAACG 1129744 32 100.0 36 ................................ CCGCTCGAAACCGCGAGAATGGCACCAGGGTAATAG 1129812 32 100.0 35 ................................ TTCCCTGATCTCTCTAAGCCGGTCAATAACCGACT 1129879 32 100.0 34 ................................ GGAAACCTTGTACTGAGCTACCCAGTCAGGATAT 1129945 32 100.0 36 ................................ ACTTCTGCCTGGTGTTTTCTCAGCGTCAAAACGAAG 1130013 32 100.0 35 ................................ ATCCATGAGCGAACAAAACAAGAAAAATTATACGC 1130080 32 100.0 35 ................................ CAGCTGCAATCCCAGGGAATTGGTAAACGCTATTG 1130147 32 100.0 36 ................................ GCCCCGTTATTATCAACGCCTACTTAATATACCTAG 1130215 32 100.0 35 ................................ AGAAAAAAAATCACGATTATAACGAACATAACTAT 1130282 32 100.0 34 ................................ GTTGGAACAGTCTAGCTCCGTGTTCGAGGCTAGG 1130348 32 100.0 35 ................................ CGGCTAAAGCACCAATTGTAATAGGATCCACCTGT 1130415 32 100.0 35 ................................ GCGTCGTTCCTGGCGCAAGGATTATTTTACGAGTG 1130482 32 100.0 35 ................................ GATGATCCCCGAAGAGATTCAGCGTGGTCAGAGCG 1130549 32 100.0 35 ................................ GATAAGGAGGACTCCGGTGAGTAGACCAAAACTTT 1130616 32 100.0 36 ................................ TTTTGTATATAGTCAGCAACATATCTGGCTGAATCA 1130684 32 100.0 34 ................................ GTTACCATCACTTATGACGATGCTCATTTGCCTG 1130750 32 100.0 34 ................................ ATTATGCTATTACATAGCTCACAGGCTGTACTAT 1130816 32 100.0 35 ................................ AAATGTCCCGTAACGGGTAGCCCATACCCGTTAAT 1130883 32 100.0 35 ................................ ATTAAATAAATTAAAAAAGGAGCAAGCCTATTCAA 1130950 32 100.0 35 ................................ ATCTATGCTTTCTAACATTTCTATGAGGGAAGTGG 1131017 32 100.0 34 ................................ AAAGGAGCTTGTTAATCCTACTATAGTGCTAACG 1131083 32 100.0 37 ................................ TTTTCAAAAACATCCCTGGCAGCCTCTATTGCTGCTG 1131152 32 100.0 36 ................................ AGAAACATTCATGCCTGAATATTAAATCTGTAAAGA 1131220 32 100.0 35 ................................ ACGGAGGTTTTAGCTTCCTAGAAAAGAATAAATCA 1131287 32 100.0 34 ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1131353 32 100.0 35 ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1131420 32 100.0 33 ................................ TGCATCAAGGCAGCTATGCCAGCCTGGCAAAAA 1131485 32 100.0 35 ................................ TGATGATCGCAGACAGGGCCATCGAAACATCCATT 1131552 32 100.0 36 ................................ GATGACAACCACCCCATTGGCACACTTCTACTGCTT 1131620 32 100.0 34 ................................ TCATTCCGGAAGAGGGATTACTTGATCGCTGTCA 1131686 32 100.0 35 ................................ GAACCCCGCATGTTAACTGCATTGATCCGGGCCAC 1131753 32 100.0 35 ................................ GATAATTCAATGCGATTGTTTTTCCAAACATCTCC 1131820 32 100.0 35 ................................ GATCAGCGCCTTGACTGCTTTCATTTCAGACCGGC 1131887 32 100.0 35 ................................ ATAATAATATGATGGAATATGTATAAAGGTGTTGT 1131954 32 100.0 35 ................................ GGGGGTATCAGTTCCGACTTCCTGATTGGTGATTT 1132021 32 100.0 35 ................................ ATGATTGAATTAGGCGATAGGCTCTACCTTTCAGG 1132088 32 100.0 36 ................................ GCTATACATACAGGCGTGGAGCAATGGGACAGGCTA 1132156 32 100.0 34 ................................ AATTATACTCTATAATTTATAGTATATTGAATAA 1132222 32 100.0 37 ................................ CTCATTAGCCCTTTACTCCATCATTCCAATATCCTAA 1132291 32 100.0 34 ................................ AAACGAATAGTAACCCCATAAGTCTCTCCATAGT 1132357 32 100.0 34 ................................ GAGCGAATGGTGATCGACGGGAAGATCGCCCACG 1132423 32 100.0 35 ................................ ACGAAAGGTGTCAGAATAACGCCTGCCGTCTGATA 1132490 32 100.0 36 ................................ AAGTTTGCCTGTGCAAACGGGGATTACATCAAGTGG 1132558 32 100.0 34 ................................ GTATGCCGATTTCCATTTACTTTGCCCCCTGCAT 1132624 32 100.0 37 ................................ AATGAGTAGAATGGTATCTATGTCAGCAATAACAACG 1132693 32 100.0 34 ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1132759 32 100.0 35 ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1132826 32 100.0 36 ................................ ACTGAGACCTTTGAGGGGTACGCAAGAATCTCGAAC 1132894 32 100.0 35 ................................ ACGAAAGGTGTCAGAATAACGCCTGCCGTCTGATA 1132961 32 100.0 36 ................................ AAGTTTGCCTGTGCAAACGGGGATTACATCAAGTGG 1133029 32 100.0 34 ................................ GTATGCCGATTTCCATTTACTTTGCCCCCTGCAT 1133095 32 100.0 37 ................................ AATGAGTAGAATGGTATCTATGTCAGCAATAACAACG 1133164 32 100.0 34 ................................ ATGGCTGATGATCGATGTGTACAGGTTCCATTCG 1133230 32 100.0 35 ................................ GTGACTGTGACAAGCGACACATCAAAATCCACAAT 1133297 32 100.0 35 ................................ TCCCGTAGGTTTCTTGCAACGAGGTGGGACGAAGC 1133364 32 96.9 34 ..............A................. AGCTTATTAAGCAGTGACTTTATTCTGGAGTCAG 1133430 31 81.2 0 .........-.......T......GG..CG.. | A [1133435] ========== ====== ====== ====== ================================ ===================================== ================== 78 32 99.7 35 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAC # Left flank : GGGGAGATATAGATGGCTATCCTCCATTTATCTGGAAGTAAGGGGTTCAAAAATGCGTGTTGTAGTAAGCTATGATGTAAGGACTGATACCTCAGAAGGCCGTAGGCGGCTAAGAAGAATTGCAAAGCTATGTGAAAGCAATGGTGTAAGAGTTCAGTATTCTGTTTTTGAATGTCAGGTCGATTCGGCAGAGTGGGTCAAAATGAAAGATAAAATTGTTAAAATTATTAATGAAGATGAAGATAGCGTAAGAGTTTATTTTCTTGGAAGCAATTGGCAACGAAAGATCTCTCATATTGGACTTAAAAAGCACTTTGATGTTGTAGATGACACCCTGATCTTATAATGCGAAACTCAAGTTCACAGTTATCTTTAAAAAACTATTTTATTGGTATGTAAGGATTTATGAACGTTACTACTTGTTCTTTCACATAATTAGGGAAGGATTCGCAAATACTTAACAATAATTCATTTATATGTAATAATTTAGGATGTATAGA # Right flank : CTAAAAATGGAGCTGAAAGGGGATGTACGCCTTCCATCACTTCTGCGAGTGGTAATTCTCCCCTTCGTGAGAAAACCTGGAAATGAATTATAATCCGAAAACATTTTAGGAGGGCCTGTTGAGGAAGATGATAGAGAATTGGGAGGAAAGATTAGACGGTGTCGGGACAGTGGTAGCTCACTTAGAAGATCACAGCAATCAATATTTGCCGATCATCGTTGCATGATGAGTGTCTGAGACCTGTACTGGATGCGTTGTATGACTCGGTATAACTGAGTTCTTTTATCACTACTGTAGGAAATGCCTTGGCGATCTTGGCAATCGATTACTCTTTGTCTACCTTGAGTTCCACCACTATCAGTCTCAAGAGCCACTATGAAGTGAGGGAAGAAGATGATCTTGATAGCGTTACCATCACCAGGGGGCGAGTACGGAGAGGTTGATAGAAGCGAGAAAAGTGCTTAATGGAGTTAATCTTGAATCCATGACTCCTTGTGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //