Array 1 214571-213077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLJT01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain SAL2609 SAL2609_2_length_653605_cov_39.8257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214570 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 214509 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 214448 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 214387 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 214326 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 214265 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 214204 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 214143 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 214082 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 214021 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 213960 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 213899 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 213838 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 213777 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 213716 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 213655 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 213594 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 213533 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 213472 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 213411 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 213350 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 213289 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 213228 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 213167 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 213106 29 100.0 0 ............................. | A [213079] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234489-232203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLJT01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain SAL2609 SAL2609_2_length_653605_cov_39.8257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234488 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 234427 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 234366 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 234305 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 234243 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 234182 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 234121 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 234060 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 233999 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 233938 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 233877 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 233816 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 233755 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 233694 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 233633 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 233572 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 233511 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 233450 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 233389 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 233328 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 233267 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 233206 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 233145 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 233084 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 233023 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 232962 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 232901 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 232840 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 232779 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 232718 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 232657 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 232596 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 232535 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 232474 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 232413 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 232352 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 232291 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 232230 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //