Array 1 27310-24415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 27309 29 100.0 32 ............................. ACCTGGCGGCCGTTGGCGCGGGCCTCGTCGTA 27248 29 100.0 32 ............................. GAACGGGCGCGGGCGATCTGACGCTCGGTCGG 27187 29 100.0 32 ............................. TCACGGTCAGGGAAGGACGGAGGGACGGAAGA 27126 29 100.0 32 ............................. GTCGGGTTGAAGGCGAGGACCAGGCCGTCGGC 27065 29 96.6 34 ............................A GACCACCCGGAAGGCGCCTCATGAAACCACTCAC 27002 29 100.0 32 ............................. AGGACGCCCGCGAGGAAGAGGCCAAGGCCCGC 26941 29 100.0 32 ............................. CAGCTGCAGGCCCAGATGGCTGCTGCGGCGCG 26880 29 100.0 32 ............................. GGCGAGGGCTTGCCGTCACCGACGTCGTCGCG 26819 29 100.0 32 ............................. TGGCAGGAACGTGCGTCGTTCGCACTCGGAAT 26758 29 100.0 32 ............................. GACGGCGTCCCGAAGTGGGAGGTGCAGGTCGT 26697 29 100.0 32 ............................. ACCGCCACCGACCTCGCCATCGAGGCGGAAAA 26636 29 100.0 32 ............................. TTGGCCCACCCGCTCGCGAAGTTCACGTTCTG 26575 29 100.0 32 ............................. CCCCTGCGTCTCAAGATCCACGACCGGCCCTG 26514 29 100.0 32 ............................. GCGCGCGCACGGCGCGCGCGCGTGAGGGCTGC 26453 29 100.0 32 ............................. AAGCGCATCAGGGACATCATCGGCACCGACCG 26392 29 100.0 32 ............................. GCGGCCCGGGCCGCCGCGCGCGTGCCGGTGGC 26331 29 100.0 32 ............................. TCCCTAGTCCCCCGTCGACACGAGGAGGGCGC 26270 29 100.0 32 ............................. GCCCACGCCGAGAAGAACGCCGACCAGCTCGA 26209 29 100.0 32 ............................. CAGAGCCCGGGTCCACTCCGCCGGATCCTTCG 26148 29 100.0 32 ............................. GTGATAACACCACTAGTGCTGGGCATAAAGAG 26087 29 100.0 32 ............................. TCTCGAACTTCACGAACTGGGTGGACAAGAAG 26026 29 100.0 32 ............................. CCCGGTACAGCGCAGCAGATTGCCGGCGGCGC 25965 29 100.0 32 ............................. CGGCTTTACGCCACCTTCCCGCTCTCCAAATC 25904 29 100.0 32 ............................. TCGGCTTTGGCGGGCGACTCCACCGACGCCCG 25843 29 100.0 32 ............................. GTAGGCCATAAATGACTCATGCGCTACCCCCT 25782 29 100.0 32 ............................. GCGACGGCAGCGCCCTGACCGAGCAGGAACTT 25721 29 100.0 32 ............................. AACGCGTTCGCCGGTGACTCCTCGGATGCCCG 25660 29 100.0 32 ............................. TCGGCGGAGGCGGTGCCCATGAGGACGGTGCC 25599 29 100.0 32 ............................. TGGGCCACCAGCGTCCAGACCCGAGACCGCGC 25538 29 100.0 32 ............................. CGATCTTGCGGAGGTGACATATGGCCATGTCG 25477 29 100.0 32 ............................. TCGCAATCCGGTGCACCATGCACCCACTTTTC 25416 29 100.0 31 ............................. CCCGGCGCCTTGGGGGACGGGTCGCGAGGAT 25356 29 100.0 32 ............................. GTGGAGTAGACGACGCCCTCGTCTTCCCAGCG 25295 29 100.0 32 ............................. CCCCCCGGACTGATCCCCAGGAGTTCCCGCTC 25234 29 100.0 32 ............................. GCTGGGACACCTGCCCGCGCCTGCACGTGTTC 25173 29 100.0 32 ............................. GCCGCGTGGGCGGCCTCCGGGTCCGAGGGGGC 25112 29 96.6 32 ................T............ GATCAGCATGGACCGCGAGTTGAACATCATCT 25051 29 100.0 32 ............................. CTGATGACGTCGAGCAGGAGTTCGCGAATGGG 24990 29 100.0 32 ............................. CCGGAGAGCCTGGCCCGGGAGATGCGCAAGCA 24929 29 100.0 32 ............................. CCAGATATCCGAATCCGAGGCACGTCCCGGTG 24868 29 100.0 32 ............................. CCGAGCAGGAGGCCGGTGTCGCCGGAGGCCGG 24807 29 100.0 32 ............................. GCCTGACGTGCTGCGGCCCCGCCCTTAAAGAA 24746 29 100.0 32 ............................. TTCGACGAGTACACCCCCGACGCCTGGCACGA 24685 29 100.0 32 ............................. CCTTCCCCGCTCAGCAGCATCTGCACCACGCG 24624 29 100.0 32 ............................. ATCATCGGGTCGCTGGTCGACGCCATCAAGTC 24563 29 100.0 32 ............................. GCCAGGGTCAATAGTTCGTTGACCGCCGCCAG 24502 29 96.6 32 .................T........... CTCCGAGTCCGCGCAGAAAACGCGCGGAGGGA 24441 27 82.8 0 ................--....C.T...T | ========== ====== ====== ====== ============================= ================================== ================== 48 29 99.4 32 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : GGGTCAGCCGTCAACGCCCACGGCGTGCGAGGCGGGGGAGTCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGATCCTCGGCGGCGGCCGCACCGAGTACCTCGTGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTACTCTGGCGGTGTCTAGGCGCTAGGTGCTTGGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTCCACGCCTACGGCATGTGAGGCGGGGGAGTCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGACGAGACCGTCGCCGCCGCGATGATCGACCGACTCGTCCACCACGCCGAGGTCCACTCCCTCAAGGGCGAGTCCTACCGCATGCGAGGACGCGAACTCGGACGCGTCCCCACCGACGACAACGACTGACGCACACCATCCAACGAGACCAACGGATGGCCCACAACTGAACCGCTGGAACCGGCCCGTTTTGAGCCGTTGCCGACAGTCAGCCAGCTGCGCCGCCCCAGGCGCACCGGCTGGCGCC # Right flank : GCTCCACAAGGCCAGGATGCGGGTGCGCGACGACCTGACCACGATGCTCTGCAAGCGGGTGGCCAGCAAGGTGCGCCGGGCCCGCGACGAGCTGGAGGAGATCCGCCGCCAACAGCAGGGAATCGTCGAGGTGCTGGTCGGCAACTACCGCACCCTGCTGCGGCAGGTGGACACCGACGGGCCCGCGCAGACGGCGAGGGCGAAGGCTGGCGCGCTGACGAAGGAGACCCTGGACGCCCTGGAGGGGCTGGACGAGGAAGCGCTGCCCGGCGAGGTGTCGCGCCGGCTGAACCGGAAGGTGTCGGCGGCGTTCCTGAAGCTCTCCGAGGGCCTGATGATGCAGTCCAACGGCGCCGGTCGAGCAGGGCGCCGACTTCCGCCAGCCGCCCGGCGGGACCGTTGCCGTCCCCGTCCCGGCCCGCCGCCGCCTCTCGCCCGGTGGCCTGACCTTCTCCGACCCGGACCGCCAGATCTGACCGGTGCGGCCCGGCCCGCCGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28195-27556 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28194 29 100.0 32 ............................. TGCGCCCCCTCCGTTACCGCAGTCGCGAGCTG 28133 29 100.0 32 ............................. TTGCTCAACGTCTACGCCGCCCACGGCTGGAC 28072 29 100.0 32 ............................. ACGGGGCGTACGTCGCGGACGTGATCGACCTC 28011 29 100.0 32 ............................. GTTCCGGCCGCGTTCGCCAGGTCTTCCCGGGT 27950 29 100.0 32 ............................. GGCGTCCTCAACGTCTCCGGCATCACCAGCGT 27889 29 100.0 32 ............................. CCGAGACCGGCCGCGGCGGGCAGGCCGTGCTG 27828 29 100.0 32 ............................. TCAACGCCCACGGCGTGCGAGGCGGGGGAGTC 27767 29 100.0 32 ............................. ATCCTCGGCGGCGGCCGCACCGAGTACCTCGT 27706 29 100.0 32 ............................. TACTCTGGCGGTGTCTAGGCGCTAGGTGCTTG 27645 29 100.0 32 ............................. TCCACGCCTACGGCATGTGAGGCGGGGGAGTC 27584 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CCAGCGCTTGCTCGCACCAGAACAGCAGATGGCCACGCCTGACCCCGAGGAACAGCTCGTGGACCTCTGGGATCCCGTCTCAGGAGTGCTGCCGGGCGGCGTGAACTACTCGACGGAGCAGACCCTTTGACCGCCTCCCTGCAGTCCGCTGGACAGTCATGGCAACAATGACCGTCCTGTCCGCAACCGCTGTCCCTGATCACGTTCGAGGAGCCCTGACCCGCTGGCTCCTCGAGGTCACCCCTCAGCTGTACGTCGGCACCATCTCCGCGAAGGTCCGCGACGAACTCTGGCACGCCGTTAGTGAATGCATCGGTAGCGGAGTGGCTGTACTGGTCCACCCGGCATCCAACGAGCAAGGCTTCGTGCTTCGCACAGCGGGTGAGCAGCGACGAAAGCCCGTCGACTTCGACGGGCTCACACTGGTGGCGATGACCCGCCGGCATCACCACCAAGGTCAAGAAATCGCAAACCCCTAGAAACATTGCAGGTCGGAAAGG # Right flank : ACGAGACCGTCGCCGCCGCGATGATCGACCGACTCGTCCACCACGCCGAGGTCCACTCCCTCAAGGGCGAGTCCTACCGCATGCGAGGACGCGAACTCGGACGCGTCCCCACCGACGACAACGACTGACGCACACCATCCAACGAGACCAACGGATGGCCCACAACTGAACCGCTGGAACCGGCCCGTTTTGAGCCGTTGCCGACAGTCAGCCAGCTGCGCCGCCCCAGGCGCACCGGCTGGCGCCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGACCTGGCGGCCGTTGGCGCGGGCCTCGTCGTAGTCCTCCCCGCGCGAGCGGGGGTCAGCCGGAACGGGCGCGGGCGATCTGACGCTCGGTCGGGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTCACGGTCAGGGAAGGACGGAGGGACGGAAGAGTCCTCCCCGCGCGAGCGGGGGTCAGCCGGTCGGGTTGAAGGCGAGGACCAGGCCGTCGGCGTCCTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38080-40524 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38080 29 89.7 32 ......G......AC.............. CACGATGGTCTGCCGGGTGCGTATCCGGTGAT 38141 29 93.1 32 .............AG.............. GGACAGCCATGTCCGACGCCACCCGCGTCCTC 38202 28 89.7 32 ........-....AG.............. TTCTGGAAGCAGGGCCCCACGGTCGCCAACCC 38262 29 93.1 32 .............AG.............. CACTCGATCTGGATCGGGCGCGCCGGGGAGGG 38323 29 93.1 32 .............AG.............. ATGTCGCCCATCTACAGCCTGACCACGGGTAC 38384 29 100.0 32 ............................. CACTAACTCGCTACCGGCATCTACCGCCGCCG 38445 28 96.6 32 ......................-...... CAGGAGAACCAGTGAGCAACCCCGTCGAGCAG 38505 29 100.0 32 ............................. GTGAGACCGGACAGCGCGTCCGGCACCTCGGA 38566 29 100.0 32 ............................. TACCCGGGTCATGCTGAATCTGGCCGACCCGG 38627 29 100.0 32 ............................. ATGTCCATGGTTCCCCCCTACGGTGCGATCTT 38688 29 100.0 32 ............................. GCGCACAGACGGACCGCACCTGGACCTGCCAG 38749 29 100.0 32 ............................. AACACGCTGGGCGGCGGGTGTGCCGTAGTAGG 38810 29 100.0 32 ............................. AACACGCTGGGCGGCGGGTGTGCCGTAGTAGG 38871 29 100.0 32 ............................. GCGTCCAGACCGGCGGTCAGGTCCATGTCGAG 38932 29 100.0 32 ............................. CCGAGCGGCTGCGCGAGCAGGCCGAGAACGAC 38993 29 93.1 32 .G.....................T..... CCAGCCGCCAGGGGCGGTCAGGGTGCGGACCC 39054 29 89.7 32 ..T..T..T.................... GGCCAGGACACCGGCACCGGCGGCATCATCAG 39115 29 100.0 32 ............................. CCTGGCAGCCTGCGGGCCAACTCGGACATCCT 39176 29 96.6 32 ..................A.......... GTCCGCGTCCCACGCGGCGTCGACCCGACGAC 39237 29 96.6 32 ..........T.................. TCGTCGCACTCGACCGGGTCAGGGCGCTTCGG 39298 29 100.0 32 ............................. GCCACCCAGTTCGGGTTGTAGTCCTCCCACTT 39359 29 100.0 32 ............................. GCGACGACGGTCACGGTCAGCACCGCGCTCAG 39420 28 96.6 32 .................-........... TCCGTGGCGGCCGCCCCGCCGGCCGCCGGGCC 39480 29 100.0 32 ............................. GTGATGTACTCCCGCATCGACTCCGGGTCGCA 39541 29 96.6 32 ...................A......... ATCGTGTTCACGGTGATCGACTTCCCGGAGCG 39602 29 93.1 32 .............GG.............. ACGGGGGCGGCGCTGCACGCGGCGTCGGTGAT 39663 29 89.7 14 ......T......AG.............. ATCTGGTCCCTTTC Deletion [39706] 39706 29 93.1 32 ...........C..C.............. GCCGCCAGCACGGTGCTCGCCGAGGTGCTGGA A [39717] 39768 28 86.2 32 .C.........A..C..-........... TCGGGGCTCCGCTGCAGCGTCCGACACGGCCA 39828 29 86.2 31 ...T.......A..C.T............ GAGACCGTCGCGGGCACGTACGTCGCGCCCA 39888 29 93.1 32 ..T........................T. GCCCCGACGACGCAGAATCGGGAAACCACAAA 39949 29 100.0 32 ............................. GTGTCCATTGCGGTGTCGTCCACCGCCACGAA 40010 29 86.2 32 ..A..........AG.......C...... TTCAGTGCCAGTTGTTCGCCAGCACTGCGGCC 40071 29 89.7 32 ..........T..AG.............. GTCCGCCAGCTGCGGCAGCTCCGCCGGATCGG 40132 29 93.1 31 .............GG.............. ACGGGGCGGCGCTGCACGCGGCGTCGGTGAT 40192 29 93.1 32 ......T.......C.............. AACACCCACACGCCGGGCTGCTCGGGGTCGGT 40253 29 89.7 32 .............AG.............C AGCGAGGGTTCCTTACCAGGGAAACCGGAACT 40314 29 89.7 31 ........T....AG.............. CTTGTATTCGGGCATCCGAACCTCTCGTTTG 40374 29 89.7 33 ........T....AG.............. GCGAGCGCGGGGGCGCTGGCGATCCAGATCCGG 40436 28 86.2 32 ...........A..C..-........G.. CCCTTCCGGCTCCGGTGAGGTGCGAACTCACC 40496 29 93.1 0 ...........A..C.............. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 94.5 32 GTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Left flank : GGGATACGGACCGGGCAAGCCCGCGCTCTTGCCCCACAGACGCCGATCTGGACGCTCAGGTCCGGAGACACCGACGAGGTAGCTGTCAGTCATGGCCGAACACCTATCAGCCACCACTGACACCGATGCTGACACTCAGGTCCCGGAGGTCGTGGCTCAGCCACGGACTGACGCCCTGCTGCGCTGTCTTCGGGTAGTTCTGTCCGGCTGCCGGGAGCTGCAGGAACCGCGGGAGACAGCGTGGTCCTCCCCGCGAGCACAGGGTCAGCCTCACGGGACAAGACACCTCCCCAGTCAGGCGGGCTCACGCACACGTTCGACCGCGCCGACAAGTTGCGCACGTACTCCCGCCCAAACCGAGCACACACTCAACGTGGAGCCTGCGCCATGACACGATGAAGTTCGCTCCTTGACACCACAACAGCGCATCCACCATCACATCCCGCCCTACAACACAGTCAATAAACAGCAAAGGCCCTGCTACGCCGCAGGTCAGAAAG # Right flank : GGGGCCCGGGCGCCATTCTGACGGGCATTCCCGTCTTCCCCTCACTCGCCCGTCGCCGCCCTGCTCGTCCTCGCGTCGCAGCCCCTTCCGACAAGGGGCGCGATCGCACTCGCGCGCGCGACCAGCTCACTAGGACGACCTGCACGCCGGTCGACCGGTTGCGGCCCGGCGCGCGCCAGACGGATGGGAACGGCTTCCCCAGGTCACCCAGCACCTTCACCAGCAGGGCTGGCATCCAGTCACGCCGTGCAGGGAGTCCAGCTCGCTCAGCCGGAGCGTTGGAGAGGATGGCGTTAAGCGGAGCCAGCGGGCCGGTCAGCGGTAACGGAAGAGCTGGTGCAGGCGCAGGACCTCGGACTGCCAGTGCGCGCGGGCCTCGCGGGTGTCGGCAGGAATCGTCCGGCCCAGGCGACGGGCCAGGCCCTGGTAGAGGGCGGGCGGGCTGCTGCCGTCCGCGGCAAGCAGCGAGGACAGCAGCGGTTCCTCGGCCGCCGTGCCCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 43375-44974 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 43375 29 100.0 32 ............................. ACCATGACCCGACTGACCGAGTACCGCGAGGA 43436 29 100.0 32 ............................. GGCACCGCCACCCCGGCGCCGGCGGTGGCTGC 43497 29 100.0 32 ............................. CCCAGTTGTTCTCCGACAGCGACTTCAAGCAG 43558 29 100.0 32 ............................. GCCCGGACCGGGATGGTCCGGGCCTCTGTCGT 43619 29 100.0 32 ............................. CCGTCGCACGTTCCCGCGTGGGCGTTCAACAA 43680 29 100.0 32 ............................. CCGTTCCCGATCGCCGAGGCCGAGACCGCCGA 43741 29 100.0 32 ............................. GCGGGCTGCGGCTCTGCCGGCTGGCGGGCGCT 43802 29 96.6 32 ......T...................... GTCCGGGCCGCCACGGTTGGGGCGTTGTCGGC 43863 29 100.0 32 ............................. CGAAGGGGTACCTACGGTGGTAGCTGCGGGTG 43924 29 96.6 32 .....A....................... CAGCCGTGACCACCATCCCGCCGCCGCCCACC 43985 29 100.0 32 ............................. TGGGGCAAGGGCCCGCTCACCGCGTCCCAGGT 44046 29 100.0 32 ............................. ATCGGCGACCAGATCAAGGCCACCCGGGCCCG 44107 29 100.0 32 ............................. CAGCGGTGTGGGGGGCGGGGCGGCCGGTCAGC 44168 29 100.0 32 ............................. CTCTCGACCCTCCTCCCCAGCCGCTACAACAT 44229 29 89.7 32 C..........A..T.............. GTCCGCCAGGTCCGCACCCGCTCGGCCGCCGC 44290 29 89.7 33 C..........A..T.............. CTCGCCCAGACGGTCGCTCCGGCTGTCGAAAAC 44352 29 72.4 32 TG.TC...T....AGT............. TAGCCCGCCGCCGCGGTCAAGGCGCCGCTCGC 44413 29 93.1 32 .............AG.............. AGCGGGCAGACTGGCCCGTACCGGCCCAAGAG 44474 29 93.1 64 .................A.........T. TCGGCAACGGGTGAAACGAGGGCCACGGACGGCGGATCAAAAGCGGGTCACTGCGAGTGAAACA 44567 29 89.7 32 C..........A..T.............. ACGCTCAGCGCGGTGCTCCGCATGGCCCAGCA 44628 29 89.7 49 C..........A..T.............. TTCGAGGTCCACGCAGAAGGGCGCAGTGGGTAGTCCTCCCCGGGGCAGC 44706 29 93.1 32 .................A.A......... GGCATCGACGACCACAGCCAGGTCGTCATCAA 44767 29 93.1 30 ...........A.T............... ACGGTTGACGACGCGCCGCGCCGCCAAAGA 44826 29 93.1 32 .............GA.............. CGGAAACGGCGGAGGAGCTTCGCCGAGCCGAA 44887 28 89.7 32 .............AG.......-...... ACGTGGTGGTACTGCACCGGCTGTCGTCACGG 44947 28 93.1 0 .........-...A............... | ========== ====== ====== ====== ============================= ================================================================ ================== 26 29 95.1 34 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : CCACCGACCGGGCTCCCGGGCGGGGTAAATGCCCAGATCGTCCGGCTGACGGCACGCAGGAGTCTCTGGCCGACGCCGACGCTCGGACGATGGTCAACCGCGCCGGCGAAAGTACAAGGCGACGTCGGTGGGTGTCTGGCCGGCCAGGAGCACGAGAGGCTCCAGCAGCCCCTCCCTGAGCGCGTCGGTGCCCTCCGGCTGCGCCTCGGTCAACCGGCACGCGCAGGTCGTGCTGGAAGCTTATGGGCCGAGAGCAAGGGGGTCCGCTCGCTAGGGCACTCCTCGCAGGTGGGGGCCAGCCGCACTGGCGCCGAGGAGACTGCGCTGCCTCCTCCCCGCAGGTGCAGGGCCATCTGCAGTTTGGACCGTCCGACGAGGCCTGCGCCGTGACACGATGAAGACCGCACCTTGACACCACAACAATGAACTGCCAATCACATCCCATCTTGCAGCACAGTCAAGAAGTCGCAAAGACCCTCCTGTGTCGCAGGTCAGGAAGT # Right flank : GGGGGACGCGAATGTGTATCACCGTCCGCGGTTCGGCTCTTTTGCCCGTACCTGCCCGGGGGCGTCAGTGCCCCGAACTGCCTGTGTGGGAGAGTACGACGCGATCATGAATCCTGGGGGTGGATCAGTGCGCACACGTCATCGCGCGGTGGTTGGGGTCGTTCTGGCGGTTCTCGGAGTGTCAGCCTGCTCCGCCGACCCGCAGGGCAGACCGGCGACCGGCGCGGCCTCCGACCGGACGCATCCTCAGGCTCGACTACGCGAAGGCCTGCTGACCCTGGACCGGCTCCCCCAGGGGTTCCAGTTGAACACGGCGGACGTCAACTCGACGACGACCGGTGCTCCGCATACCCCGTCCGCAGTTTCCATCGCGTCGATGCCGTGCTCCGAACTCGGTGTCGAGTCCTTCATGACGGCTCACGCTCACCCCGTGGAGGACGCGGCGGTGGGGGTTGAACGGACGCCGGTCGGCGACGACGATATGGGTTGGTTCGGCCAGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 46568-49129 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 46568 29 100.0 32 ............................. GTCAGTTCACTGGTCGCACCCTTGATCAACTG 46629 29 100.0 32 ............................. CTTGCCGCCGTGGTGCTGTGCTTGGCCGCCCG 46690 29 100.0 32 ............................. GAGAAGCCTGATCTCCCGGGTGCTGAGGCGTT 46751 29 100.0 32 ............................. ACAGCAAGGGCCTAGAGAGGCATCCATGTACG 46812 29 100.0 32 ............................. ACGACGGCCGCAGCAGCAGCGCCGATCCAGTC 46873 29 100.0 32 ............................. AGACGGCTAAGGCCTGCCCCGAGCGCGACGCG 46934 29 100.0 32 ............................. CCCACGCCCGTCAACCTCGGCAAGCCCCGCCA 46995 29 100.0 32 ............................. GTTGTGATCCCCTTGCGGGCGTTGACGACCTG 47056 29 100.0 32 ............................. CAAAAAGCGCGCGCTCCCATCCCTGCTACGGG 47117 29 100.0 32 ............................. ACGTGCGAGGCGGGCCCGTGGACAACTGCGGA 47178 29 100.0 32 ............................. GCCTCGCCGGCATCGACGTCCTGGTCGTCGAC 47239 29 100.0 32 ............................. GTGATGTTCACGGGCGGGTGCCTTTCGGATCG 47300 29 100.0 32 ............................. CTCGTCTACGCCACCCGCCACTTCCACAACCG 47361 29 100.0 32 ............................. TTGCAGAGCTGAATTCCCCGGTGGTTTCGCAC 47422 29 100.0 32 ............................. ACGGACACGTACTCGTGGTTGTCCTCGGTGTA 47483 29 100.0 32 ............................. TCGCAACCCGGTGCACCATGCACCCACTTTTC 47544 29 100.0 32 ............................. GCGCCCAGGCGCCGTTCTGACGGATGTTTGGC 47605 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 47666 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 47727 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 47788 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 47849 29 100.0 32 ............................. GCTGACGAGGTTCGGCTACGCGAAGGTCCGGG 47910 29 100.0 32 ............................. CTGCCGCGCTCGCCGCCGTCCGCGCCGCCGAG 47971 29 100.0 32 ............................. TTGACGACGTGCTCGTGGCGACCGTTGCCGTC 48032 29 100.0 32 ............................. GCGTGGTCACCGGGGACGCCGGGGGCCTGCTC 48093 29 100.0 32 ............................. GACCTCGGCCGCACCACCGCCTCGTTGGAGGG 48154 29 100.0 32 ............................. CAGCAGCAGGCCGCAGCTGCGGCCGCGGCACA 48215 29 100.0 32 ............................. CTCGGAGGCGAGATGAAACGCGACGGGGCCCC 48276 29 96.6 36 ......................G...... TCCGCCAGCCGTTCGTCCAGGCCTGCGTCCTTCAGC 48341 29 96.6 30 .....................A....... CTCTTCGGCGCGTCCCAGCGCACCGTCCTC G [48368] 48401 29 96.6 32 ..................C.......... AAGTGTCACCCCCGGGCCGTCACCCCCGGCCG 48462 29 100.0 32 ............................. TCGGACACCCACACCTCGGGGTTCTCGCCGTC 48523 29 100.0 32 ............................. TCGGACACCCACACCTCGGGGTTCTCGCCGTC 48584 29 100.0 32 ............................. CCGGACACCCACACCTCGGGGTTCTCGCCGTC 48645 29 96.6 32 .................A........... CCGGACACCCACACCTCGGGGTTCTCGCCGTC 48706 29 100.0 32 ............................. GTCAGCCCCGAGGAGTGGGACGTGGCCCGGCG 48767 29 100.0 32 ............................. TGGAGTGCGCCGACCGCAGCGAGGCCTCGCGC 48828 29 86.2 32 ............CC..........C..T. CGGCCGACGACGGCGGCAGCGTTGCCGAAGAA 48889 29 86.2 32 ......T....GCC............... AGTTCATACAGCACTCAGGGAGGGAACTGCAT 48950 29 89.7 16 ...........GCC............... CCACCCGGCGCTGGTC Deletion [48995] 48995 27 89.7 20 C................--.......... ATGGAGGCCGGATCGGAGAG Deletion [49042] 49042 29 93.1 29 ............CC............... GGCATGACCGCTCGGCATCACGCCCGCCC 49100 29 72.4 0 C..T...T.A.....A.....A...T..C | T [49124] ========== ====== ====== ====== ============================= ==================================== ================== 43 29 97.8 31 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : TGCGGGGGTCAGCCGACGACCACCGCCTTCAACACTGGCGGCGCGCTGTCCTCCCCGCGCAGGCGGGGGTCAGCCCCGGCCGTGGGCGTCGTGACGCGGGAGCGCGCCGTCCTTCCCGCGCGGGCGGGGGTCAGCCGTCCCCGAACTACGTGCAGGGCGCCGTGGGCTGGTCCTCCCCGCGCAGGCGGGGGGTCAGCCGAGCTGCCCGGACTGGGAGTTGGTGCAGATGTAGTCCTCCCCGCGCCCGCGGGGGCAGCCGAGGCCGGCACTCTCCAGGTGCCCGAGGTGGGTGTCCTCCCCGCGCCACTGCGGTTGTGTCCAGGGCCTCGCTGGCGGGGCGAGTCCTCCGCGCAGCCGGACGACGTCGCCTTTGGCGTGGCACGATGAGACACGGTTCCTTGACAGCACAACAGCACAACAGCACACCCGCCGTCACGGCCCGCCGTGTGCAGCCAAGTCAAGAAACGGCAAAGGCCCCGCTGCGCCGCAGGTCGGAAAGT # Right flank : CCGCCAGACTCCCGAACAGCTACGGTAGGAGCCGTGGGTGTCCGGTCGAACACACCACAGCCAGGCCGGAGGAGGCGAACCGTTGAGCGCGCAGCCGATCGCGTACGCGGACGTGAATCACGAGGCCGCGTTGAAATACGCCGTGCAGCTCATCGATCACCGGTGGGCCCAGGTCATCGAGGGGCGGATCGTCCTGGTGTCACCCACGTGGGACCACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGCTGTATCAGCGGGTCCGGGAACCTCGACCTGCCCGGCTCCCCCAACTGGTACATGCCTGACCTCGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGTGCCCCGCTCTACCTGCTCGCCGACC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 49843-52591 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUB01000022.1 Kitasatospora psammotica strain JCM 4434 sequence022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 49843 29 86.2 32 C..........G.GA.............. GCCGGCGTCGGGACGATCGTCGCGGGACCGTC 49904 29 86.2 32 C..........G.GA.............. GAGACCTTCGCGGGGGTGACGGTGCCGGCGGT 49965 29 86.2 31 C..........G.GA.............. CAGATCTTCAAACTCGCCGTGGACAACGGCG C [49991] 50026 29 86.2 32 C..........G.GA.............. CGGCTGAACCTCGTGCGGGGCATCGTCACGGT 50087 29 86.2 32 ...........G.AG.......G...... CCGAGAGTGCTGGACTCCCGAACCGCAAGGAA 50148 29 89.7 32 ...........G.AG.............. AGCGAGGGTTCCTAACCAGGGAAACCGGAACT 50209 29 86.2 32 ...........G.AG...A.......... CCGAGCCGGCGGAACCGCGCTTCCATGTCCCT 50270 28 82.8 32 ....GT..-..G..T.............. GGGTTCATCATCGACCAGGAAGTCCCTGCAGA 50330 29 100.0 32 ............................. CCGAGGCCCGGGCCACGGAACTGACCGAGGAA 50391 29 93.1 32 C............T............... ACCTGGAACGTCTCGCGGTAGTCGCGGCCCTG 50452 29 100.0 32 ............................. CCGCGGGCCTCGTCGGGGTAGTAGCCGGCCTC 50513 29 100.0 33 ............................. CGCTTCACCGCCCCCGCCGTGGAGCGTCGCGGA 50575 29 89.7 32 .....T.....G..T.............. TCAGGTGATGGTGCGCCGCCAGAGGTCCCCCT 50636 29 100.0 46 ............................. CTGCCGTTGACCGTGATGCTGCGGTGGCCGTGGTCCTCCCCGCACC 50711 28 75.9 2 .C.G.......G..T......-..CC... TC Deletion [50741] 50741 28 72.4 133 .G...T...-....A..AC...C.C.... CGGACTTGTCAAACGCCGACCATGCGCCGCGTGACACGATAAGAACTCGCACCTTGACACCACAACAGCACACCAAGTGGCGCAGACCAGTCGAGAAACAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 50902 29 86.2 32 C..........G.GG.............. GTTCCGTCCTGGATTTGGCGCCTGTAGGCGTC 50963 29 86.2 36 C..........G.GG.............. CGGTCGTCGTCGAGGTTGAGGCCGAGCCGAGTGTGG 51028 29 89.7 32 C........A.....A............. GCGGTCTACGCGTTCTGGCGCCTGCCCGTTGA 51089 29 93.1 32 ...........G..T.............. GAGTTCGACCCGACCGCGCTGGTCAAGCGCGC 51150 29 100.0 39 ............................. CGGTGCACGCGGGAGGCCGGGCCGTCGAGGGTCGGCGTC 51218 29 100.0 33 ............................. CTGGGCAAGGCGAGCATTCAGCCGAACCGGGCT A [51246] 51281 29 75.9 31 CCT.C....C......T....A....... CGGCATGCCTCGGAGGACTCCGTCAGGAGTC 51342 29 96.6 32 ..................C.......... CTCGCCGAGTGGATCGCCCGAACAGGGCTGAG 51403 29 96.6 32 ...T......................... GACCCGCATGCACACGCACTGGAACGACACCG 51464 28 96.6 32 ..............-.............. TGAGCGATGCGGGCCCGGGCGCCCTCAAGGAG 51524 29 96.6 43 ...........G................. ACCAGGGCGTGGGCGGGGCTGCGGAAGTCACCGTCATCGGGGG 51596 29 89.7 68 ...........G.AG.............. AGCACGTTGACGGTGCGGCTGGCGGAGGCCCTTTAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 51693 29 89.7 32 C............AT.............. CCCCCTCTCCCCTTGGCAGGCCTGGCCGTTGG 51754 29 89.7 32 C............AT.............. GCTGACGAGGGAGCAACCCCCGCGAGCGCGGG 51815 29 89.7 32 C............AT.............. CGAAGGAGGCAGCGGAGGCGCAGGCGGCGTTC 51876 29 89.7 32 C............AT.............. CAATTCGGTGTAGGTGCACCACCGGGACGCCA 51937 29 89.7 32 C.............T..A........... GAGACGAACCCGAACTCGGGGCTCCTCGTGGC 51998 29 89.7 32 ...T...T..............A...... ACGTGCAGCGGCTCGCGCGGCTCGGTGGGCTG 52059 28 96.6 32 .....................-....... GTCGCGGACCGCGTCGGCAGCTCCTACCGCGT 52119 29 96.6 50 ............A................ ACGGCGTACGGGTCGTAATCCGCTGAACCCAGCCCTCCCACTGAATCCCA 52198 29 93.1 32 .C....G...................... GAGGAGGCGCTCAAGTTCGCCAGCATCGGTAT 52259 28 96.6 32 .....................-....... GCCGTGGGGGCGGGCGTGATCATCGCTTGCCG 52319 29 96.6 32 .................A........... ATGAGCACGTTCTCCGGCATGGTCCGCAACAT 52380 29 96.6 32 ...........G................. CGGCCCACTGGCGAACGCGGGCGTTCTGCCGC 52441 29 89.7 32 C............G...C........... CACGTCGACGGTGACGGGGGCACAGCGGCCGA 52502 29 93.1 32 C............T............... CCGGCATCCCAGCTGGGTCTGACACAGCGGAG 52563 29 86.2 0 A.......G....T..T............ | ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 43 29 91.0 36 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGCTGTATCAGCGGGTCCGGGAACCTCGACCTGCCCGGCTCCCCCAACTGGTACATGCCTGACCTCGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGTGCCCCGCTCTACCTGCTCGCCGACCGGCAGAACCGCACCTGCACCCTGTTCTCCGAGCCTCACGACCTCGGCTACGCCGTCATCGACGGCCCCCACCCGTTCGGGACCGCGCTCCGGCTGCCCGAGCCGTTCAATCTGACCCTGGACACCACCGCGTTCTGACCACACGAGGCCAGCCGACACCCAACCGGCCAGTAAAGAAAACAGCAAAGCCGCTGCTGCGCCGCAGGCCAGAAAGC # Right flank : GCACTCGCATCGTGTCACCGAGCCGGGCCTCCGGGCGGCGTAAATACCCAGATCGCCCGGTGACGGCACGCCCGAGTCTATGTTTACCGGCGCCGACGCTCGGACGATGGTCAGCCGCGCTGGCGAAGGTGGAAGGCGACATCGGAGGGTGTCTGGCCGGCCAGGAGCACGAGAGGCTCCAGCAGCCCCTCCCAGAGCGCGTCGGTGCCCTCGGGCTGCGCCTCGGTCAGCCGGCTAACGGCCGCCTGCTCCCGGGTCAGCGGTGAGGGCAACATCGGATCGTCGAGGCATTCGTAGATGACCTCCACCCTTGCCAGCAGCTGCTCGCGGCGTTCCTGGGCGGATTCGACGGACTGGGCGTCGCGTGCAGTCAGCAGGGCCGGAACCGGAACGGACAGTGCGGCGTGCAGCTGTCCGAGCGTCGGCTCCTCGGCCAGCTCCGCCACCACCTGGTCGGTCAGCGGAACCTTGCCGTCGACCACTCGTTCCAGGACGGCGAT # Questionable array : NO Score: 4.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //