Array 1 147583-148570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCD010000013.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147583 28 100.0 32 ............................ ATCACCGCCGCCAGTCCCACCGTTTCCGTCTC 147643 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 147703 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 147763 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 147823 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 147883 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 147943 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 148003 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 148063 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 148123 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 148183 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 148243 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 148303 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 148363 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 148423 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 148483 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 148543 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9823-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCD010000033.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9822 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9762 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9702 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9642 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9582 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9522 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9462 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9402 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9342 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9281 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9221 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9161 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9101 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9041 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8981 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8921 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8865 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8805 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8745 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8685 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8625 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8565 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8505 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8445 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1698-109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTCD010000050.1 Pseudomonas aeruginosa strain V2O4Ci V2O4Ci_ctg_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1697 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1637 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1577 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1517 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1457 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1397 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1337 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1277 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1217 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1157 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1097 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1037 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 977 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 917 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 857 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 797 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 737 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 676 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 616 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 556 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 496 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 436 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 376 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 316 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 256 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 196 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 136 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //