Array 1 248936-251406 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB897919.1 Thioalkalivibrio sp. ALJ4 C936DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248936 29 100.0 32 ............................. TACTCTGGCACCGTGACAACCCGAGCAATCCG 248997 29 100.0 32 ............................. ACGCGGACGACGAAAACCGCGTGCACTACCTG 249058 29 96.6 33 ............................T GGTGGAATACGGCACCGATGTGCTGGCCGGAGC 249120 29 100.0 32 ............................. GACGAGCCGAATATCCGGCGCGTCGGCGGGTT 249181 29 100.0 32 ............................. GCACGGGACTACTCAGAGGTTGCGGACCAGAT 249242 29 100.0 32 ............................. TAGTCGTCTCGTCGAAGCGCGGATGCTCTGGC 249303 29 100.0 32 ............................. TACCTAGAGGTACAGAGAGAGTTGAGGTATTG 249364 29 100.0 32 ............................. TCCGTGATGCGATCCAGCGGAAGCCCGTCGAC 249425 29 100.0 32 ............................. GCGTCGTTTCCGGCCCCTCGATCACCGAGAGC 249486 29 100.0 32 ............................. AACGACCGCACCGCGCGCGTCGCTGTGCTCGA 249547 29 100.0 32 ............................. GCGTTCGAGCTGGCAGTCTCGCTGGTGCAGGT 249608 29 100.0 32 ............................. CCACAATATGCGCTCTAGGTTGGCTTTATGGT 249669 29 96.6 33 ............................T GTTTGGAAGAGAATTGCCCCGGCTCCACTTCTT 249731 29 100.0 32 ............................. CTACAGCAGGTAGCGCGTTTACATCGTCAATC 249792 29 100.0 32 ............................. GGAACGGTCGATCTAACGATCCCGGCGCATGT 249853 29 100.0 32 ............................. GTCTGGCACATCGTCCCAAGATTCCAGAATAG 249914 29 100.0 32 ............................. GGTGGATGAAAACTTAGGAGGCTGGGCACCAT 249975 29 100.0 32 ............................. GATTCGTGCGGGCGGTCCATGACCAGAGCAAC 250036 29 100.0 32 ............................. CGGTGCAGGGCGCCCGCGATGCCGAGGAAGCG 250097 29 100.0 32 ............................. GGCGGACGGGGGTTCCGAATGAGCAGCATCCA 250158 29 100.0 32 ............................. GTTATAAGGATGATGCTGAGGCTGCAAGAGAC 250219 29 100.0 32 ............................. GTGTGAGCAACAGCTACACGGTCTACGTCCTG 250280 29 100.0 32 ............................. GTAAAGGATGAACGTTTTGAGGTTGAGGCATC 250341 29 100.0 32 ............................. AACGTTCCCGCGTCTGAGCCTGTCAGGCTGTC 250402 29 100.0 32 ............................. GGAAGGCAGCGAGACAAGCCTAGAGATTGAAA 250463 29 100.0 32 ............................. GTTTAGGTCATTGTCCTGTAGTTCGTGTTCCT 250524 29 100.0 32 ............................. CACTTAGGCGACACGTTCGCCGGGTGCTGTCC 250585 29 100.0 32 ............................. ACCTGTCCGGTGGCGAAGACAAGGCCGAAGCG 250646 29 100.0 32 ............................. TGGGAGAGGAAGCTGGACGGGTTCCCGCCCGG 250707 29 100.0 32 ............................. CTCGAGGGCGTTGGAACGGGCACGGTCGATTA 250768 29 100.0 32 ............................. TGCGGCGATCGGCAGAAGCCCGATGGGAAGGC 250829 29 100.0 32 ............................. TCGGCGTGGTTTCGATCGATGACTGGTCCCAG 250890 29 100.0 32 ............................. AAGCCGCCCGGCCCGTCCTCGCCTTCATAGAA 250951 29 100.0 32 ............................. TTCGCGCGGATGGTTTCGTTACGCGCCTTGGT 251012 29 100.0 32 ............................. GTTGAGAAGCACGCCGACTTTCGGGTGATCGC 251073 29 100.0 32 ............................. ACGGCCTCGAAATGCTGACGGGAGTGTAATCG 251134 29 100.0 32 ............................. TACCAGACCACGGTCCCGTCCGTCAGCGAGTA 251195 29 96.6 32 ........A.................... CCCACTTCTGTGGCGGCTTCGTGGATGATGCC 251256 29 100.0 32 ............................. GCTTGGGCCTTCGCCGGCATCCCCGACGCGGC 251317 29 96.6 32 .................A........... GAGACTACGATGCTTTTCTATCTGCTGCTGTT 251378 29 96.6 0 A............................ | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.6 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCGCCTCCGCCAGCACCGGAAGCGCAACCACCCGCGATCCCGGAGGCCGAACACCTGGGCGACGCCGGCCACAGGAGCAGATGACCATGACGATGCTGGTCGTCGTAACCGAGAACGTACCACCCAGACTGCGCGGCCGCCTCGCTATCTGGCTCCTGGAAATCCGCGCCGGAGTCTACGTCGGCGACGTAAACCGCCGCGTACGCGAAATGATCTGGGAACAGATCAACGCCTTGGTCGACGAAGGGAATGTGGTCATGGCATGGGCCAGCCGCCACGAATCCGGCTTCGAATTCCAGACATGCGGAAAAAACCGCCGTATACCAGTCGATTACGAAGGACTACGGTTGGTGCGCTTTGCACCCGAACCTGACCATGAAACATAACCCGCGGAAAATGCGGCACTCTTTAACAACTAGCAACCACTTGATTCCGCCGGCTGAGCTGGTGGATCATTCAGCCGCCAAAACCTTCCCGTAGATCAACAAAATACAGGAAGA # Right flank : GCGCTCGTAGATGTGGGGCGACATGAAGGGACATCACTTCGTCAGCAACACTTATTTCAGTGAAAGCCATTTTCGTTTAGTACTTTAGAGTTAATACGAAACGACATCCGTCCCTCGTGTACCCAGTTCTGTACCACCGCGGCGCGGTGTGCACCCGCTTCATTCTGGGTATCGGCTCCAACTCCCGGGTCGATTGATGCATGATCGGTGCGACGACACGTCGCCGGCGAAGGAGCATTACGCATTGCCCTCGTCGGGGAAGTCCTGGTCGCGCTACTCCCGAGCTCCAGAAAGCGGAAGCCCGGCGCGGGACTGGGCTTGCGCGGTTTCATCGGTTCCTGGTCTCGGCGGTCCTGCGTCGCCATCTCGCGCCGCAAGGGTTCTAGCTCGGAGGGCATCAGCCGACGGGACGCGGACCCGGGCGAGGAATCGGGCTCCCGACTCCTTGAGCCGGTTGATCGGGTGCCTCCCCACCACTCTGAGGGTTCTTGGCCATCGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //