Array 1 61297-61773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYN01000008.1 Ruminococcus sp. AM28-29LB AM28-29LB.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 61297 36 100.0 28 .................................... ATGAGTTGCAGAAAGACCTTGTAAAGCG 61361 36 100.0 26 .................................... TTCATCGACAGATGAGTAAGAAGAAC 61423 36 100.0 26 .................................... TCCATAGTGGATTGTCTTACTTTATA 61485 36 100.0 27 .................................... GTGTCAATTTTAATAGAGCCATCGTAT 61548 36 100.0 27 .................................... GAGCAATAATATTGTACCACACCCCTA 61611 36 100.0 28 .................................... AATACATCGGCTACTGCGAATGTGGCAA 61675 36 100.0 28 .................................... AGGAAACAACCGTTACCGACGACGATTT 61739 35 91.7 0 ...........................-..T.T... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.0 27 GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Left flank : ATTTTTACGACAGTTCAAAATATGATGAAAAGAGCAAGCTTCCGTGTGATGCCGATGCAAACGGTGCGTACAACATTGCCCGCAAAGGTTTGTGGATTGTTGAACAATTCAAAAAAGCCGATAATGTTTCAACTGTCGAACCGGTAATCCACAATGACCAATGGCTGAAATTTGTTCAGGAGAATGATATGGCGAATAATTAAATTCCGACTCTTTAACACGGTACTGTCGTTAAATATCAATCCGACAGTACCGTTGTCAAGGCTTGATATTTGACACAGATAATAAAAGAGTATATAATCAGACTGAGGATACATAGAAAAAGTTTGGTTTTGCCAAGAATGAAGATTCCCCTTTGCTGATAATCGGCTAACCTCTGCAAACCCAAGTCTTAATATTTTTTGTCCATATGGGGTTATTGAACAATGAAAAAGTTATTACAATCTCACATATGTTATTTAAGTTATTTTGAAATTTATGTAACATCATACAACGTAAGG # Right flank : TTAGATAAAAAGGTTACTTACACCGATTAACAACAAATTCATTTTGCTACAAAAATACAAGCCACACACAAACAAAAGCAGAGAGTCCGAAAGCTCTCTGCTTTTTATCGTTTTATAACATTGTACCGAACCATTACAACAAAGTTACCTACATAGCTATGGGAATTATCATAAACAGAAAAAGTCACGACTGCATATGCAATCGTGACCGAGTTGGTGGAGATGAGGGGAATCGAACCCCTGTCCGAAAAATTCTTGCCAAGGGTTTCTCCGAGCGCAGTTGGTGTTTTAAATCTCCCTCGGTGCATCGCCCATCAACAGGCTATGCACTTTGGCAGCTCCTAAGCTGTGACAGGGTTCGGAGCGCTCCCCTGTTCACATTTACCTCTAATCGACGCCCCTTACACAGCCGAGGTACTCTGTGCAGGAACGAGCAGCACTCAGGCTGCTAAAGCAACTGTTTTGTTGTCAGTTAATTTTAAAGTTGCGGATTTTATGGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACCCTATATAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 123129-123296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYN01000008.1 Ruminococcus sp. AM28-29LB AM28-29LB.Scaf8, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 123129 37 100.0 28 ..................................... ATACAGACTAAAGTCAATCTCGAAAGAA 123194 37 100.0 29 ..................................... CGATTTTTTCATTGCCAAAACGATATTTT 123260 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 100.0 29 GTTTTACTACCTTATAGATTTACACTATTCTCAAACC # Left flank : CCTTAATTATAAACAATTACTACGGTAATGGCAAGAAAAAATGCACTCATTTTCTGTTACAGAAAAAAACAACCCCACGATTATTTTACCGTGGGGTTGTTTTCATAGGGTTGCTTTTCAATTATTTTTAGAGATTAAACATCTTTGCAATATTTTTCAGCAAGGGCAAAGAACGCTTTTTCGAGCGAATCCAAGGTTTGTTCCGTCATACTGACCGACATACTGTTTTTGTCGGAAAATATGATTTCAACTATTGTAACCGTGGCATCATCGACTGTCAGTCCTTTGTTTTTTGGATTATATTTTTTCAGAATTTCCAATGCGTCTTCGGCGGTGTCACACAGCAGTCTCATATCCGTTTCGTCAATCAAAACATTTTCAAAAGCGATATAACCGCATTTGCAGATAGCGTCCATAAGGAAATTTACACTTTTTTTTCGCACATAAAAAGAACAGCAGTATTCTCAAACAAATAATCGGAAACATAAACAATCGTGTTG # Right flank : CTCAAATTGAGAATAAAATGCACCCACTATACTGTGCACGGCAAATCTATAGGGTTATTTTATAACATTTGTATAATGATTGTCAATAAAATTCGCACAAATCATTATCAATCACAACAAGGTGTCCCATGCTGTAATCCAGCTTTGATGTTTTCGTAATTACTACCGTTCTCCAACTCATCTAAATATCCTCTTTTCTGATAACTTACATATGTAACAAATCAATCTTCTTCTCAAACAAACCTGTTACCGACTGATGAACAAGATAAATCGACTTTACACCTTTAATCTCCGACAATACGGAATTTGTGGAAACAACTCCCGCTTTTTTAGCTTCGTCGATTAAAGTTAAGTCACCGGTAACAACATTTGAGTGAATAATTTTAAGAATTTCTGCAAGAACAAAACATTGTTTTCTTACATCCAGTTTTTCAAAAGCATCACGATGAGATGCAATTTTAACACCCATATCACCGAATTTAACCTTTAGAATTGTATCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACCTTATAGATTTACACTATTCTCAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //