Array 1 18233-17938 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDRE01000013.1 Bacillus pumilus strain DE0471 NODE_13_length_118579_cov_56.107943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18232 32 100.0 35 ................................ GTGAACACCGTTAAATAAATAATAGTAAAAAGACA 18165 32 100.0 33 ................................ CCTGCCACTTCCTCAAAAGTTCTCGTAATCATT 18100 32 100.0 34 ................................ CAGAAGGGCTTTTTTTGCTTTCGAGGTCCATAGC 18034 32 100.0 33 ................................ ATTGTTATGTACAAAACCTTTATCAAGAATGCT 17969 32 71.9 0 .A........CC...A....A.A...CAC... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 94.4 34 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAATTCGCACTCTATATGAGTGCGTGGATTGAAATACCATCAAATTAATGAATTCAAAAAACTGTGAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCAAATTATATAAAGTCAAATACTTATCCATATCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTCCCCTAAATCCAAGCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGTAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGATGATCCATGTCGATATGGCAGATCGCGACGAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCG # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18964-18524 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDRE01000013.1 Bacillus pumilus strain DE0471 NODE_13_length_118579_cov_56.107943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 18963 32 100.0 35 ................................ TCAAATTCCGCCATAAGTCACATCCCACCCCTCTA 18896 32 100.0 34 ................................ CCGATGCAGCCACGCCGACCATCCAATCGCCGTT 18830 32 100.0 34 ................................ TAAAATCACTTGCCTTTGAAGAAAATGTGATCAG 18764 32 96.9 44 ............A................... ATAAGCATTGGAATGAACTAAGAAAAATCGAAAAATCAGTCAAA 18688 32 93.8 33 T...........A................... ACCATCAAATTAATGAATTCAAAAAACTGTGAA 18623 32 93.8 35 ...........CA................... CTTGCTTGGATATGTCGGTTTAGTTGGTGTTTCAG 18556 32 84.4 0 ...........CA......GA......A.... | T [18527] ========== ====== ====== ====== ================================ ============================================ ================== 7 32 95.6 36 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : ATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTCCAATCTTCGTGCTTCTTGACGCGATCGACGTCGCACTCTACATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGCGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAGAAATGAGAAAAAATGTATGTTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGGGTGCGTGGATTGAAATGTGAACACCGTTAAATAAATAATAGTAAAAAGACAGTCGCACTCTATATGGGTGCGTGGATTGAAATCCTGCCACTTCCTCAAAAGTTCTCGTAATCATTGTCGCACTCTATATGGGTGCGTGGATTGAAATCAGAAGGGCTTTTTTTGCTTTCGAGGTCCATAGCGTCGCACTCTA # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27316-27017 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDRE01000013.1 Bacillus pumilus strain DE0471 NODE_13_length_118579_cov_56.107943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27315 32 100.0 35 ................................ TGCAAGAGGCCTTTTCCTATTAAATATTGATGGAG 27248 32 93.8 35 ...........TG................... CTGTACCTGCATAGGCGTACCCTCTACCTTTAATA 27181 32 100.0 34 ................................ AAATCGCCATAGTTAGTTGCCACAATCATATTCG 27115 32 100.0 35 ................................ ACTTCAGTAGAATCAATGAAGCCATTAGTTGTAAC 27048 32 84.4 0 ...........T.........C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAGCTCATCGAAAAAGTAGATTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATCAAATTCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTCATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTCCCTTAAACGGGTATGACCACCTCAAATCCAACTTCTTACAACACCCTCTTTCAAATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAATATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATATTATCCATTCGTAATGAATGATGAAGGAGGAAATGGTTTGGGTGAGACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATCGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //