Array 1 177670-176261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENMR010000001.1 Lelliottia amnigena strain TZW16 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177669 28 100.0 32 ............................ TGTACGGGCGATACTCGTGACACCTGCTTGCA 177609 28 100.0 32 ............................ AGAGCCGGTAACGCCTGGCGAGGTAAAGACGG 177549 28 100.0 32 ............................ TTTCTCGCCAGGTAGTGCAACGCCAAGCATAT 177489 28 100.0 32 ............................ TGTGGATGCTGGCTATGCAATACCCGGGAATT 177429 28 100.0 32 ............................ TTTGAAATTATGTTCAGGTGCGCACCATTTTT 177369 28 100.0 32 ............................ GCACAAGCCCGCGTGCTTCGCTGTCAGTGTCA 177309 28 100.0 33 ............................ CGATCAAAGACCATCAGATTCGCGAACTGGTAA 177248 28 100.0 32 ............................ CAACACGCTGACACTATAGGCATGGGGTTAAG 177188 28 100.0 32 ............................ GGAACTGAAAACCGTTCATATCAATGTCGATC 177128 28 100.0 32 ............................ GATACTGGCCGGGAAACAGCACGTTATTACCA 177068 28 100.0 32 ............................ GGCACAGAAACAATAGAGCAGCGCCAGCAAAG 177008 28 100.0 32 ............................ GCAACCGCAGCTTGTACAAGTGATGCGAATAC 176948 28 96.4 32 A........................... AGCAAATAGAGAAGACACCTGGTTTGAATCCA 176888 28 96.4 32 .............G.............. ATCTGGAAACAGGGCAAACCCTTCCGCCCCGC 176828 28 100.0 32 ............................ TCGGCGGTGTTTGGCACCAGCTTGACGACCAT 176768 28 100.0 32 ............................ TGTATGGTCAAACTAGGATCGAACTTAATCAT 176708 28 100.0 32 ............................ AGTTCGGGCGCGAATCAACCGGCGGGGGCGCA 176648 28 100.0 32 ............................ TGCAAATCACCGTGGTTGCTTGAAAGGTTTAA 176588 28 100.0 33 ............................ TTTTACGACCGCTGAAGCACTCGCAGCACTGAG 176527 28 96.4 32 ...........C................ ACCACAATCAGCCACCAGCGTGACAAACTCAG 176467 28 96.4 32 ...........C................ GAACGCGCGTTCAATCGGTTTGGCCTGACCCC 176407 28 100.0 32 ............................ GCGCCTGCCTGCCCATGAGCCATTGCAATTAG 176347 28 92.9 32 .........................CG. CTCGAAGACATTGAAGGATATGGCAGAGCTCT 176287 27 71.4 0 A.........AG...A...A-.G.T... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCTCGACTGCCATTCTCTTTCGCAAATGCAACCTGTAAGTCGATGCCTTACTGCTTATCTGGACACCCTTCAACGCGAGTTGGCAAAATCGATGACTGATTTTTACGTGGTCGAAAGCGCCGATAACCAGCCTCTGAAGCGAAAAGAGTGGCTTTTAGAAGATACCGAAACGCTTTGTGATTACAGCCGCGCGTTAAATCACGTTCTGCAGATTTCACACGTTGATGGCGAGATGCGCCCTCATCTTACCGGCCTGCTGCACGACATCACGCACGCGATTGCTGACGATCTCAATGGTTCTCAGATCCAGGTCACTAACCGTTCCCTCTAACCGAACCGTGCCGGGATAGTTCCCGGCACAATCCAAAACCCTTTTTTCAGATGATTTTTAACGTATTGATTTTATTACGCGTAAATAACCACTCAGAAAAAAGGGTAGAAATGGCTGAATGTTGATTATTTTGCGTCGCAACAATAAGATAGCGCCGTAGCACTTCA # Right flank : TCGCCAACATTGCGCATTTCGCACTGAGCTTAATTGCCCACGCGCGCTCATTCACTGCTGCTGCGATATAGGTATCAATAACAATCCAGAAATACAAAAAAATAAGGCCGGGGATATCCCGGCCTTATTTATATCTGTACGCCTTCAGCGGCGAAATTAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATACGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCGGTGACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAACAAAACAGTTTCGGCGCATTGCCCAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 197932-197122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENMR010000001.1 Lelliottia amnigena strain TZW16 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 197931 28 100.0 32 ............................ GTGAACCGAAAGCTGATGTTATCAACGGTACT 197871 28 100.0 32 ............................ AGGTCGTGCCATCGCGCTGATAAATTATGATA 197811 28 96.4 32 .............G.............. GTATACAGCAGCTTCAACACAACGACGAGCGC 197751 28 100.0 32 ............................ TGACCCAGTGCGATTTGCAATGCGGTATTGTT 197691 28 100.0 32 ............................ ATCCATAACGTTCACAGAATCCGGAGAAAGTT 197631 28 100.0 33 ............................ TATCCGCTGGGTCAGGGTAAGGGGTATTGGCAT 197570 28 100.0 32 ............................ TCAATCAGTCGCACAACGTCGGCGGGATAGGT 197510 28 100.0 32 ............................ TATATTCCCGCGCGGTAAACGCATCCCCCTTC 197450 28 100.0 33 ............................ TCAGAGAGTTTCGCCAACTGGTCGAGGTCGTAG 197389 28 100.0 32 ............................ GCAACGGCCAGACGACCAGCCTCCGGTTTAAA 197329 28 96.4 32 ................T........... TCACTTCGAACCCGCTTCTGCAGAGCAGGCTC 197269 28 96.4 32 ............T............... GCTTCGAGCGATGCCAGCGCGATACTCAACAG 197209 28 96.4 32 ..............G............. CTGGTGAGTTCTTTCGCGGCAAAGGGCAAAGG 197149 28 67.9 0 ............G.......GAATACCC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTAGCGGCATGCTGGTGGCAAAAGGATTACCAGGGTTTATCGCGTATGGTGTGTTGATTGGCGAAGTGGTTGCGCCTGTGCTGATTGTGCTGGGCATTCTGACGCGTCCGGCAGCGCTGGTGCTGGCCTTCACGATGATTGTCGCCTGGCTGATGGTCGGCACCGGCAAAACGTTCGCGCTGGACGCAGTAGGCGCATGGGCGATCGAAAGTCTGGTGTATTTCTTTATCGGCGCGTTAGCCGTGGCGTTTTTAGGTGCTGGGCGTTATGCCTTAGCCAAAGACCCGGCCTGGAAGTAAGATTTTCTCCGGGCGGCGCGAGCTTATGTCGAGATAAAAACCAGCATCTGCAAAAAGGGTTCTTCGGAACCCTTTTTTGTGGGTTCTGTTTAACTCATTGATATTGTTGAGTGGAATGAGTATCCAGGAAAAAAGGGTTTGGCGCGCTGGAGTCGAATTTAACTTTAAGTATCAAAAGCAAAGGTGTAGATTGCTTCA # Right flank : GCCGAGGCGGGTATTTAGTATTTCAAATTAAAGGGCTACAGTGTAATCAAGGTTGCCGATCTGACTTTCCATTTTCCATCCTCGCGAACAAGGCAATCCGCGATGACATGTTTTTTGTTCTTACCAAATGCAATGTAGATATTCATGCACACCGCATCAAAATCAGAAGAGATTACACTCACGTGATCCCAGTCCTCCTCCCAATCCTGGGCTTTGATAAACATATCTGAATCTGGCATATCTTTATCATTGCTGTTGCCCGAATAGAGAGCTTTTATCGCTTCGATGGATTTTTTTGACACGTAAGGGGTAAGAGTGTCGGGCTTAAGAAGCGGGGATTTATCCTGCTTCAGGGCGTCTATATACCAGCGATTGAAATTCAATGCGGCAATTTGTGGCGTTACCGCAAGTGGACTGGCATAAATCGGCGGGCATAATGATAAAAGGAAAAACATCCAGGCTTTCATATTTTAACGCCTGTATATTTCAAAAGATGGACG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //