Array 1 87019-85425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015749.1 Pectobacterium parmentieri strain RNS 08-42-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87018 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 86958 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 86898 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 86837 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 86777 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 86717 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 86656 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 86596 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 86536 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 86475 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 86415 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 86355 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 86294 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 86234 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 86174 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 86114 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 86053 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 85993 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 85933 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 85872 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 85812 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 85752 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 85692 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 85632 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 85572 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 85512 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 85452 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 106297-104234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015749.1 Pectobacterium parmentieri strain RNS 08-42-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106296 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 106235 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 106175 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 106115 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 106055 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 105995 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 105935 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 105875 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 105815 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 105755 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 105695 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 105635 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 105575 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 105515 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 105455 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 105395 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [105343] 105342 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 105282 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 105222 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 105162 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 105102 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 105042 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 104982 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 104922 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 104862 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 104802 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 104742 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 104682 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 104622 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 104562 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 104502 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 104442 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 104382 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 104322 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 104262 28 85.7 0 A...........GC..........A... | G [104236] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : CAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3625310-3624488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015749.1 Pectobacterium parmentieri strain RNS 08-42-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3625309 29 100.0 32 ............................. ATTGTTGTTGAACTGCTCCAGTTTCATGCCCA 3625248 29 100.0 32 ............................. GTGTCGTACTCCACTGCCCCCTGTGTGGCTCA 3625187 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 3625126 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 3625065 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 3625004 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 3624943 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 3624882 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 3624821 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 3624760 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 3624699 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 3624638 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 3624577 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 3624516 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : TTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3628307-3627179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015749.1 Pectobacterium parmentieri strain RNS 08-42-1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3628306 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 3628245 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 3628184 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 3628123 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 3628062 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 3628001 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 3627940 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 3627879 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 3627818 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 3627757 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 3627696 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 3627635 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 3627574 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 3627513 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 3627452 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 3627391 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 3627330 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 3627268 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 3627207 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //