Array 1 12442-14660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEVM010000016.1 Treponema sp. Marseille-Q4523 NODE_16_length_66632_cov_29.206195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 12442 36 83.3 36 ...A...A.......TG......G.....C...... TTGGCAAGGTAGACACTCAGCGGCGTTGCAGTTGCA 12514 36 100.0 30 .................................... TCGGATTACTGGTGATTATTGCTACTATGG 12580 36 100.0 30 .................................... GAGATATAATTAAATCCGCCGCTTGATAGG 12646 36 100.0 30 .................................... TATTGCAGTTTTCCAACCCTACCTGCTTTT 12712 36 100.0 30 .................................... TATTGCAGTTTTCCAACCCTACCTGCTTTT 12778 36 100.0 30 .................................... TTTGGCGGTCAAAACCTTGAATTTTGGCGG 12844 36 100.0 30 .................................... CTTATCCATCTGCATATTATACAGATTTCC 12910 36 100.0 30 .................................... GCACAGCAGCGAGCAGAACTTTCAGAGCTT 12976 36 100.0 30 .................................... TTTTCGGCGCTTGATAGCTTGTCTGCGCCG 13042 36 100.0 30 .................................... TTTGCGCAATCGCTGTATACTAAACGTATG 13108 36 100.0 29 .................................... CGAGTTTGTAAGACAATGCTCAAAGTTTT 13173 36 100.0 30 .................................... TGAAATCACGTGTACTGTATTTATCCGGCG 13239 36 100.0 30 .................................... TAATTTTAATCAAACGCTTAACAAGCATTT 13305 36 100.0 30 .................................... TTACTGAAGCATTAACAGGCGCTGTTTACA 13371 36 100.0 30 .................................... TACACATAGATAAACCGGTATACGCAATTC 13437 36 100.0 30 .................................... CTGGACGCATCCGTTTACACACACGGCGTT 13503 36 100.0 30 .................................... AAAGCGGACTTGCCGAAATGCTTGCCACCG 13569 36 100.0 30 .................................... CGTCCGCGGAAACTTCCTGTCCTGACGTAT 13635 36 100.0 30 .................................... TTTATAAAGGCGCGTGCGGAAACGTCAACA 13701 36 100.0 30 .................................... TAGTACCACCGATAAAATGAGGACGCTGCA 13767 36 100.0 30 .................................... TATTCTTGTGATATGGGTGAAGTTCATCCT 13833 36 100.0 30 .................................... TTTCTGCGGCGGCAACCGTTTCAAGTTTTG 13899 36 100.0 30 .................................... GAATGGAAAAACGTCACGCGAGCGGTAATG 13965 36 100.0 30 .................................... GGCACAACAGAAGCAATCAACATCAAATAG 14031 36 100.0 30 .................................... CCTTTTGGCTTCCAACCTTGAACAAGCACA 14097 36 100.0 30 .................................... CAAAACCATGACCAGCGTACTGACCGAGAT 14163 36 100.0 30 .................................... AGCACGAAGCGAACCTAAAAAGTGAACACG 14229 36 100.0 30 .................................... TGTTGCTGTTTATTATAATCTTTTGTGCCA 14295 36 100.0 30 .................................... GATTACTAGGATGAATAGGAAACGCACTGC 14361 36 100.0 30 .................................... CACGTCGTCACGGCGATGAACGCAAAAGAC 14427 36 100.0 30 .................................... TGAACAGACTGTCAATTCAAAGATATCGCT 14493 36 100.0 30 .................................... TTTTTAAGTTTACCGGTGGGAGACTTATTA 14559 36 100.0 30 .................................... TATCGCTTTTGCTGTGTTGTATTTTAAATG 14625 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 34 36 99.5 30 GTTGCAGGTTGACCGGAAAAATTAATCAGTTATAAT # Left flank : TTTTTATCTGTACGTTTTTTCCGTTATATATGTTTTCGGCGCGTTTACCCTACTTCGGAAAGCTGTCATCGTCTTTACTCACGTAAGAATCCAAACGAAAAGCTGTCACGGAAAATCCGCGGTATAATCAAATCATGACAAATAATTTTCAATGTTTATACGACGGCGACAAGGTGCGCTGCGCGCAAGTACATAACAAGCTGCAAAGCCTATGTGTCCAGGCATCTTACCGGGGACAATTGCTGTGAAGTTGCGGCCATGCTGATTCGCTGTCGCTCGGACGAATGGATAGCGTACAAGTCGTTTAACGCAGAAGATTTTGCTTTAGGTCGTGTGTATTTTATTGACGGGGACATGCGATGCTCGATAACGAGAGACAGCTTTGAGGAATGGGGACGTTCTTTATAAGCATTAAATTAAAAGGAAGCAATCGTTTCAAAGAAACAAGTGAAATGGGTCTGTTCCTTGAGATGGGGTAAGGTAAGTCCTTATTGCACTCA # Right flank : TACGTCCGGTATAAATCGTTGCTATACAAAGAAATGGTTTGTACCGGGCGTGTTATTTTTAAACGAAAATCAGAATAAAAGAAACTGTTCCGGCTGCTTTTTTTGCCGTTTTTCGCCCGCATTATAACTGATGATGTTGCCATATTGCCTGTCCGTTATCGTGATAATATCAACTTTTCCCTTCATCGGCAAGTTATCGTGTATCATTCTGTAATATTTTTCACAAGCATCTTTTCCCGAAAATAATTTTGTATAAATGGAATATTGAACCATTGAAAAACCGTTATCCAATAAAAATTTTCGAAATTCCGTAGCATCTTTTCGCTCTTTTTTTTCAATGACCGGCAGGTCGAACAGCACCATCATCCACATAAGCTCATACTTATTTAAAATCAAATCGCGCATTTTCATCTCCGTCCCATAGGGGCAGTTCGATATCCGGTTTTTTATTTTCCAGCGCACGTGCATAGGCATTTGCCATATATTGCATACTTTGAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCGGAAAAATTAATCAGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //