Array 1 34071-34469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAR010000024.1 Bifidobacterium longum strain 1001283B150225_161107_F12 NODE_24_length_39974_cov_61.1921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 34071 28 100.0 32 ............................ CACCACCATGACACACACCAACCACGCGCTCC 34131 28 100.0 33 ............................ TAATAGCGGCTTCCAAGACCATGGCCGTGGATG 34192 28 100.0 39 ............................ TAAACCGCTTGACCTCGCTCAGATCGGGTTGACCAAGGA 34259 28 100.0 33 ............................ TAGGCGACGGGCTCGACCTGAAGCAGATCGAAT 34320 28 100.0 33 ............................ CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 34381 28 92.9 33 ............CA.............. TTGGAACGCGCCGTTGCCTGTACTGCAGGCCAA 34442 28 85.7 0 .......T..T.CA.............. | ========== ====== ====== ====== ============================ ======================================= ================== 7 28 96.9 34 ACCTACCCCGCAGGCGCGGGGATAAACC # Left flank : CGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGATTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGTAACAAACTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : CTGTGAACCGCTTTTATTGACATCTGACTTTTGTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGCCGAAGACACGGAACTCGAAGGGTTCGCAGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 38188-39188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPAR010000024.1 Bifidobacterium longum strain 1001283B150225_161107_F12 NODE_24_length_39974_cov_61.1921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38188 28 100.0 33 ............................ GAAACGGAAGAGTCTACGCCAGAGTCATCGATG 38249 28 100.0 33 ............................ GAAACATGGCACTGCCCATCCAAGTAAATCCCA 38310 28 100.0 33 ............................ CCATTGGGATTTCGACTGGCTCGATCGCATCAT 38371 28 100.0 33 ............................ TGAGTGGGGCAGGTGGGTATAGAAACGGCCCGG 38432 28 100.0 33 ............................ GGCGTCTTCGACTCAGGCAAGGTCACATACACG 38493 28 100.0 33 ............................ GTGTCCCCAACGGACGGGAAACCGTTCCAGCGG 38554 28 100.0 33 ............................ GCGACTCAGAAAATTGACCCGGCAACCATGCAC 38615 28 100.0 33 ............................ GGATATGAAGGGTGTGGATGGCGTCGTGTTATG 38676 28 96.4 33 ..............T............. GGTCGGGACTCTTCTCCGTATATCGTTCATCAA 38737 28 100.0 33 ............................ GCTTGCTGGGGGTGCAATCCCGCGCCCCGGCCA 38798 28 100.0 30 ............................ GGTACTCACAATGGCCGACGAAATGAAGGA 38856 28 100.0 33 ............................ TGACGGTGCCGTCCGGACGCGTCAACGGATGGT 38917 28 100.0 33 ............................ GGAGGTGATCAAGGTGGACGACGAAATCACACC 38978 28 100.0 33 ............................ GAACACCCAGCAGGTCGAGGATGAAGATCGGAA 39039 28 100.0 33 ............................ GGAGACCCACTCTAAATAAGCTATAAAGATTGG 39100 28 100.0 33 ............................ GTCTGGCTACTCGATCATATGAAGGCTTGTCCA 39161 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CCTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGCGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //