Array 1 86743-88578 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZU01000004.1 Bifidobacterium saimiriisciurei strain SMA1 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 86743 33 100.0 34 ................................. ACATCACGGCCCGCGTGGCCGACACCGAACTCGG 86810 33 100.0 33 ................................. TGCGAGAGGGACGCTGCACTGCCAATTGTCTGC 86876 33 100.0 34 ................................. ACCGGAGGGTCCGACCACGAGATCGGCGAGACCG 86943 33 100.0 33 ................................. TTCAGCTTAGCCGCCTAGGATGAAATATGGTGC 87009 33 100.0 33 ................................. AGGTCATCGAGCGTCTTCTGCGACGCGTCGAGG 87075 33 100.0 34 ................................. CTTTCGATGATTGGGCGGGTATGAAGCCCCCGCC 87142 33 100.0 35 ................................. CACTTCCAGCATCACAGGAGACAAGGGGCCGGGGC 87210 33 100.0 34 ................................. AAACACGACGACTAAATAAAGGATTAAACATGGT 87277 33 100.0 34 ................................. CAGAACGCCTTTTGGCAGACGCTCGTACACGATG 87344 33 100.0 35 ................................. TGGCTGTAGGTCCAGTAGGTGGCCTCGGTCTTACG 87412 33 100.0 34 ................................. AGCATGCGCGGACAGTCCGAGACCGACAACGTGT 87479 33 100.0 35 ................................. CGCTTCGACCCCGAAAAGCCGTTCGCCCGCCAATG 87547 33 100.0 33 ................................. TGCCTCCAAAACCCACACGCGCCATGGACCGTC 87613 33 100.0 34 ................................. ATCCGCGGCGCCAGGAACATCGGCGGACGATGGG 87680 33 100.0 33 ................................. ACGGTACAGGGGTCGAGCCAGCCCGTCACCACC 87746 33 100.0 34 ................................. GATTCCCGCACGGTCCACTAGGGTGCCGCGTCAA 87813 33 100.0 32 ................................. CTTCCGTCGCACAGGGGGTACGGTGCGTACTG 87878 33 100.0 35 ................................. CGCAGGGATGGAGACCTGCCATCACCAGCGTGACC 87946 33 100.0 34 ................................. GGATACGACCCCCACGACGAACACGACCAGGCCG 88013 33 97.0 33 .....T........................... TCCGAGAAGGAGACGAGAGCGTTCCGCCGCCGT 88079 33 100.0 33 ................................. TCGATGGCGACGATAACCCTATGGATATCACGT 88145 33 100.0 35 ................................. GTCCGGCATGGGGAGCCTCCACCACCCGAGAATCG 88213 33 97.0 33 .....T........................... CACGTCATGGAAGGCACCTATGACACCATCGAC 88279 33 100.0 34 ................................. ATCAAATACGGCGAGGACGGCTCGTCCCTGACCA 88346 33 97.0 34 ....................T............ TGGCTCGGCCTCGCACCACACGACCTCGAACACA 88413 33 100.0 34 ................................. ACCGGGTAGGCGTTCAGGATTCCCCCGAGCATTG 88480 32 93.9 34 ...........T...-................. TGGTCAGTGTTCATTCTCACGCTCATATCCGGTG 88546 33 78.8 0 .C..........AT.......A......T..GA | ========== ====== ====== ====== ================================= =================================== ================== 28 33 98.7 34 GTCGCCCCTCACCCGAGGGGCGTGGATTGAAAT # Left flank : TATGGGCAGCGAGTGCAGAACAGTGTTTTTGAGTGTTCGGTAACGCCATCTGACTACTTGGTGTTGAAGCATGATTTAGCAGCAATTGTGGATGAAACGTGCGATAGCTTGCGCTATTACAATCTCGGTTCTCGCTATTCTTCAAAAATCGAACACTACGGAGTCCGGAGGCATGTGCCGATTGACGAGGTGATGATGCTCTGACGATAGAATGGTCATGGAGTATTTCCGTGCTTAGAGGTCGTTGGCTTCGTCATCGATGTTTGGCGCGAAAGGTAAGCTCTCATAGAATCTGCCATCTTTCGCACCTTCGTGAGTGAATTTTGAAGACGGTTTTTCCGTTCTTCTAGATGCTTGATAGCTTCAGAGTGGATGCTCCTCCGCCTTTTATGGAAGAGTTTCGCGATTTCGTGGGCGGAGAGACGAATGATTATTCGCTATAATCAGCATCGGTAATGGGCATTGTTTCCATATAATGGAATATGGTGTCCATTTCCGCA # Right flank : AAGGACTGGAACAACCCCGCCTAAGAGGCATAGATTGAAATATGAAGGAGGAATGATGACCATTCATTATCTTGGCGTTACCGACGTTGCCAATAAACTTGGCATAGCCACGTCTGCCGTCAGCGCCTATAAGCTTCCCGAGCCGGACGTCATGATAGGACGTACCCGAGGGTGGAAAGAGGAGACCATCGATGCATGGAATGCCGCTCGTCCTGGGCGTGGTGTTGGCGGAGGTCGGCCGCGCAAGAAGCCGAAGACCGACTGAAAAATGACGGGGCTTCAAAGTTAGGTGAAGAACATGGTACGGAATACGATATCGCGTTGATTTAGGATTCCGTGCCATGTTACGGGCTGTCATCGTTGATGAAATCGTTGAAATTTCAACGATGATGACTGCCTGACTTGCGTGGATTGCGGTAGGGAAGGATGATTTGGGCGAAATTGGCGTTCCGTGCCGCGAATTTGTGGCAGGGAGTGGCGATGGCGGGAGGATTGTCGCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACCCGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //