Array 1 319379-324107 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT897823.1 Salinivibrio costicola isolate PRJEB21454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 319379 29 100.0 32 ............................. AGCAATCACTTTGCTCAGCATCAGGCATCGTT 319440 29 100.0 32 ............................. CGCATCCTCTTTCTTTTGTTTGAAAGAATAAA 319501 29 100.0 32 ............................. CGCCAGCAATACCGCCGATAACTTGAGTTGTT 319562 29 100.0 32 ............................. CATTTCCGACAAATCGGCGTCGGTCACTTGGT 319623 29 100.0 32 ............................. TGGTAAAATTTTTGCGTAAATCTACATTTTTC 319684 29 100.0 32 ............................. TTTATTTAGCGATGTAGCGTCTAACAATTCGT 319745 29 100.0 32 ............................. TTACCCTCGCCTGATTGCTGATTAGCGCCCGA 319806 29 100.0 32 ............................. CGTTCTAATCCGCCGACACATACGGGCAATGG 319867 29 100.0 32 ............................. CCTACGTTGGTCCCGAGCGAAACAACCACGGC 319928 29 100.0 32 ............................. CGGCTCAACTTCATAGCTGTAAAGCGTATTAG 319989 29 100.0 32 ............................. GCGGTCGATTGCCTCTTCTGTGCCCATTTCGG 320050 29 100.0 32 ............................. GGCGCTAATGCACCCCTATTTATTAACATGTG 320111 29 100.0 32 ............................. ACGCCAACGTCTTGAAAAATGTAGATTTACGC 320172 29 100.0 32 ............................. CTATCTGGGTATTCGTTATTATAAATTCCCTA 320233 29 100.0 32 ............................. TTTATGACGTTAATTCAATGTATCCGTTTGTA 320294 29 100.0 32 ............................. TTGAAAACCCCCCGCTAGACTGTATCGACGAT 320355 29 100.0 32 ............................. AAACATTTTGCGGCGCGGAACGATTGCCCAGC 320416 29 100.0 32 ............................. CAATCCGCCATCAATCATATTGTTGTAATCAA 320477 29 100.0 32 ............................. CAGCAGAGCGGCAACAGACTATCAGCGCTGTA 320538 29 100.0 33 ............................. TGATGCCACCCGAGTCCCGCCAGCCATTCAGCA 320600 29 100.0 32 ............................. TAAAGCGCCGCGTTAGCAGCGCTATACATATC 320661 29 96.6 32 ............................T GTTTATCATGACGTGCGACTCAAGCGGTAATC 320722 29 100.0 32 ............................. CGCCTAAAAGCGGCAGGCATTGAGCCGCGCGC 320783 29 100.0 32 ............................. ATCCTCGCAACCAGCGCGATGGCAACCATGCT 320844 29 100.0 32 ............................. CTGAGGGCTACACACGCATCTTTTGTCGCGAA 320905 29 100.0 32 ............................. CCAACCTCTGAAACACCGAGCAGGGTGGGCTA 320966 29 100.0 32 ............................. TAGTCACCATCATTCGCTGGGATGATAGTGTC 321027 29 100.0 32 ............................. GGTGACGGTGTATTCACGAGAGATGATGGTGT 321088 29 100.0 32 ............................. AGCGGTCATTCGATAATGTCGCGGCGGCATTT 321149 29 100.0 32 ............................. CCATAAATCAGCAACCGATGAGCGTTCTGACA 321210 29 100.0 32 ............................. TGAGCGCCGCCTCGGTTGGCGTATGCGCTCGT 321271 29 100.0 32 ............................. CGGTGCGGCGTCGAGCGAGTAAGTTTAACGCC 321332 29 100.0 32 ............................. ACCTTTACGAGATAATGGTAACGAATGGCGTA 321393 29 96.6 32 ............................T CCTAAACCAGCGCGGCGCTGAGTATGAGAAAG 321454 29 100.0 32 ............................. CAATATGGAGAGAGCAAATGAATTGGTCAGAT 321515 29 100.0 32 ............................. TGGTCAGCATTCTCGCGCCCTGGCATGTACTC 321576 29 100.0 32 ............................. CGCGACCAGTACCTTACGAATCTCTGCCGCGT 321637 29 100.0 32 ............................. TCCCAACGCTGGGAGGGCTGGGGGACGGCGCT 321698 29 100.0 32 ............................. CACTGATAGCGAAACACCGTCAGATTCGGATA 321759 29 100.0 32 ............................. CGAAATTAACCTCATCGATGATGAACCTTTCA 321820 29 100.0 32 ............................. CATCTTGCGTATAAGTTGCCCACTACAAAAAA 321881 29 100.0 32 ............................. CGATTTTACTTCGCTGGGCTTCTTGCTAAGCA 321942 29 100.0 32 ............................. TCAATTTCAGAAAAACCGCTAACGATGTTGTC 322003 29 100.0 32 ............................. CTGGCGATACCGTAATGTCAGCGCTACCGAAT 322064 29 100.0 32 ............................. AGGTCTGGACGCTTTGTAGATACGACTCCGTG 322125 29 100.0 32 ............................. CTGGGGTATCTAATGGAAATTAACAAACTAAG 322186 29 100.0 32 ............................. ATGAGTCCGTCTCGCTCTCGAATATCGTTAAC 322247 29 100.0 32 ............................. TGATGATCCTGATGATCCTGAATACTGGCGGA 322308 29 100.0 32 ............................. GAGCCACTACAGATATCAATCCAGACGCAACT 322369 29 100.0 32 ............................. TACAAATCGTTAATGCTCGGCGTGTCTAAACA 322430 29 100.0 32 ............................. GGCGAACTCTCTATCCCCCAGTTGTTTTGCTA 322491 29 100.0 32 ............................. ATGCCGTGATCACCTATTACGATGGTTACGGC 322552 29 100.0 32 ............................. GCATAAAAGCTCATGTGCCCTATGCCGTAAAG 322613 29 100.0 32 ............................. TCAGACGTACAGGGCGATACGCAATATCGAGC 322674 29 100.0 32 ............................. GGTTTTAGTTGTGCTTTGTGAGTTATTATTTA 322735 29 100.0 32 ............................. ATTTAACGCTAAATTTTTTAATCTGCGACGCC 322796 29 100.0 32 ............................. CGGGTGCATCGGTTAAGTGGTAGCTTCATAGG 322857 29 100.0 32 ............................. CCTTGTTTTGCAGCATCCTGGCAAACTGAGTA 322918 29 100.0 32 ............................. ACCATATACAATTGCTATTACAGGACGTTTAT 322979 29 96.6 32 ....................A........ CGCTGGCGCCACAACGGAATACAGTTTGGCGA 323040 29 100.0 32 ............................. CAATTACGATCCCGAGACGCGCACTTACAGCG 323101 29 100.0 32 ............................. CGAGAGAGCGATTGTGTATAACAGTCCCAGGT 323162 29 100.0 32 ............................. GACGATGCCATGTTTGCAGATTTAGACGAAGC 323223 29 100.0 32 ............................. CCGGGGGCGGCGATAATGGTTGGCGTTTCAGG 323284 29 100.0 32 ............................. CGAATAGGTAGGGGCTTCGTTTTCCCAGCGAT 323345 29 100.0 32 ............................. TATTTTACCCCCAACGTAATTAAGTAGCGCCG 323406 29 96.6 32 .....A....................... TACAATCCTATAGATAGGCACCGGTCAGGGGA 323467 29 100.0 32 ............................. CTACAATCAAAAAGAAGGCTCTCTGGAATCGT 323528 29 100.0 32 ............................. GAGTCACGATGACAGCCATCAATCTCGCCGCA 323589 29 100.0 32 ............................. ATGTGCAAATTCAGCAAAACTACATCGTCATT 323650 29 100.0 33 ............................. GTTGCTGTAACGGGAGGAAAAGTTGCTGTTTGC 323712 29 100.0 32 ............................. AACGTCGATTATGTGGATGAAGTAGGCGGTCA 323773 29 100.0 32 ............................. AGCTGGATTACATCGGCTTTCGTGGTCTGGCT 323834 29 100.0 32 ............................. CGTTTGCAAAGGCGATGGACTCTCACAATTCA 323895 29 100.0 32 ............................. TGTTGTTTTAACTTTGTCGATCCATGGTACTA 323956 29 100.0 32 ............................. AGTGGGTTTTGATAGCGGTCGCCTGAATCAAT 324017 29 93.1 32 .......T......T.............. CATTACCGGTTAAGGTGAGGTTTTGGCACTAT 324078 29 75.9 0 .........A......AA...T.T.C..A | T [324081] ========== ====== ====== ====== ============================= ================================= ================== 78 29 99.4 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : CGATGATCGAAGAGGTATTAGCGGCAGGTGATATTACACCGCCTGAACCGCCTCATGACGCCCAACCACCAGCTATACCTGAGCCAAAATCAATCGGTGATAGCGGACATAGGAGCGGCTAGATAATGACTATGCTTGTTGTCGTCACCGAAGCCGTACCGCCAAGGTTACGTGGCAGACTTGCTGTCTGGTTGCTCGAAGTTCGCGCTGGTGTTTATGTGGGCGATGTAACGCGTCGCGTGCGGGAAATGATTTGGGAGCAAATAACTGAACTCGCTGATGTCGGCAACGTGGTGATGTGTTGGGCGGTGAATAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAAAACCGTCGGGAGCCTGTCGATTTAGATGGTTTAAGGTTGGTGGTATTTAAGCCGAGTGATGAGGATAAATAAGCCCAGTTTGCTCTTTAAAAAGTTGGTAGAAAAATGCAGGTCGATTTTTGTTATATAAAACAGTAATATCCGCTTAGA # Right flank : AATTCCCTTTTCTAACCGAAGTTGGGTTTTGCTATCTTCCTCATGTTCATGGGAAGTGGGGGCGTGAGAATGTCGAATATGTTATGGGTAGGAGTGTAGGTAGTATATCGAAACATCAACGTCGATATGCTATTTACGTTAGCAGTGAGAAGGGTTATCGAACGATAAGGCTGAGATCGTCTTATCTCAGCCTTGTGATATTGCCGAGCGCTAATAAGCTACGCCTCACTCAGTTGCTCAACCGCCTCTAGTGCTTGAGAGCCGTATATCAATGACGGGCCGCCACCCATTACGATCGCGACGTTAATGGCCTCTACGCATTCTTGTTTGGTTGCGCCATGTTTGAGAGCGGCGGCCACGTGAGCACCGATACAGCCATCGCAGCGCGCGGCAATACCAATCCCTAATGCAATCAATTCTTTGGTTTTTACATCGAGATCACCTTCAGCCATTGCTGCCCGATGTAGCTGCCCGAATGCGGACAGGGTGTCACTGCTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 503227-503794 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT897825.1 Salinivibrio costicola isolate PRJEB21454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 503227 28 100.0 32 ............................ GTCGGTTTTCGGCGTGTAATAGCGCTCACACA 503287 28 100.0 32 ............................ AGCCTAACGTACCCAGAAAAAGCCGGCCCAGA 503347 28 100.0 32 ............................ AACGGCTCTGACCGACGCCCGCGCGAAAAGCC 503407 28 100.0 32 ............................ GGACAGCCCTCATTAATTGATACTGACTGCTC 503467 28 100.0 32 ............................ TTGCAAGCGTTGATGAAGGCCGCATGGGCAGC 503527 28 100.0 32 ............................ ACTGACGATAGCAAAGCACTCTGGCGGCTAGG 503587 28 92.9 32 ...C......A................. AGAGGGGTCGCCATTGCCGTCACCGGAACCGT 503647 28 96.4 32 ...C........................ AGCTCGATAATGCGCGCCCAAAATTTCCGATC 503707 28 92.9 32 ...C................A....... CAACCTCAATATCAGGACGGACTTTTACAAGC 503767 28 82.1 0 ...C.................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAGTACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATCCTGTTACCCTTGTTTTGGGATCTTTAAAAATAAACTGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : GACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTATGAAGAGAACGAGATCTCGTTGGGTTACGTGTTCATTTACCGTCGCTAGCGTCGATTCGGCGGTGCGCCAATGATCTTTAAATCCGCTTTTCTACGCTTTTTCATCGTCGCGTAGAAATTCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //