Array 1 188069-188892 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019301.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 188069 36 94.4 30 .......G.G.......................... GTGGCGGCGTTAGCATTAATATATTACACC 188135 36 100.0 29 .................................... TTACTCAGGTAGAATTATTCAAGGTATAT 188200 36 100.0 30 .................................... GCAGCCAATTTTGAAATCAAACACAATGGC 188266 36 100.0 30 .................................... AAAGAAGCGTAACTCTCTTTTCAAAAGCTC 188332 36 100.0 30 .................................... ACAAAAGAACAACTAAAAAAAAGCGTTGAA 188398 36 100.0 30 .................................... TTAACCGATAGAGAGTTATTCTTACTCAGA 188464 36 100.0 29 .................................... CAATCGGTAGCTATTGCACCGTCTTAGGT 188529 36 100.0 30 .................................... TTACAGTATGCTCAAGAAATGGGTTATGAG 188595 36 97.2 30 ...................T................ TGTATTGCAGAACCGACACTTGCGGGTGCA 188661 36 97.2 30 ...................T................ CAAAACGAACTTTTAAATATAAAATGTCAT 188727 36 94.4 29 .......G.G.......................... CTTTTGCAGGTGGTATGATAAGTTTTTTA 188792 36 100.0 29 .................................... TTGAAAATAAAAAACTTAAATTATTAATC 188857 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Left flank : GATAACGATATGAGAAAACATCTTATCTTGCTCTGTACAGCGGCTTTCCTGTCGTCGCTGCACATCAACCGAAGCCAACAGAACCGAACGAGCCACCGCATCGAGCCGATGCAAAAGCCCCAACCACCCTTGCCGATGTCGCACTATCGGCAAAGCCGCCCTTGTGCTGCCGTCCGAATCCACGCCACAACCTCTACACTTTCCACGACGTAAAACCACTCCTATTTTGTAAAGATAATTCCATAGAAAAACCATAATTTCGATTTTACATTCCAAAAGCGGCTCTTTTGCAACGCAAAAGAGCCGCTTTTACCGTGTAAAACCTACGCTTTCGCAATGCAAAACAATAGGTTTTACAATGTGCTGATAACGAGATAGTTACGCAATAGTTTTGCTTGTGAAAAATATTTACACCTTTCTCGCCTTTTTTCACCCCTTAAAAGGCGTGTTCCCCCTTTCATTTTTACTTCCCTCAGTTCCATTCCCTTGCTTGTTAATAA # Right flank : CCGCACCTAACCTAACTGTCTGATTCTTATATGTTTTGTTTCTTTCTTTTCCACCAGTATTTTTTTCCTTTCTTATTATGGTTATATAAATTTCGTTGTTGTAAATCTATATCTTTTCTGATTTGTATTGAGAGGCTCTGGTTAATTTCTATCATTTCCTTTACAACCTCCCGATTATGTATCATTATCTTCTCATCAGGGTTGTTCTTTTCAGCAAGCAAAAGTTTATGAACAAGGGTTCTATATTTAAATATCAGCGACATAACCTCTTTTGATAGATAGATGCCATTGCCTTTGTTGTATACCTCTTCGGTTAGCTCTTTGAAGAATTGGCGTATATTGGCTTGTCTGAAGTAATAAGTTTTCTCTCCGCCATCCTTAGGCTGTTCCCACACCAGTATGCAGTCGTCATTTTCTGTGTCTGTGGTAAACCTAAGCAATTTATAAATGCTTTGGTGTGCCTTCAGTATAGCTTCATAGTGCGCACGTTTAATGTTCTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 602421-603238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019300.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 602421 47 97.9 30 .....................................C......... ACCCACAATAAGAAGAACTACTATCTGCCT 602498 47 100.0 30 ............................................... TAGCAATGGTGCTATAATATCCTCCAGGCT 602575 47 100.0 30 ............................................... TTGTTGTGTAAAGGAATCGGGTTAAAACCC 602652 47 100.0 30 ............................................... CCAATGATGTGAGCGTGTCTACAGCCGTGT 602729 47 100.0 30 ............................................... AACGTATTCAGTACCTAAAAAACCTAATAC 602806 47 100.0 31 ............................................... GATATCCTAGGTGCTTATAATGATGCCAGAG 602884 47 100.0 30 ............................................... CCCTCTGAAATTTTATTGAAAACTATACAC 602961 47 100.0 30 ............................................... AACTTCCATTTTCATAATGTGTTACTCCTT 603038 47 100.0 30 ............................................... GGGGGCTATACACGCCCCCACGTTGTTTTA 603115 47 100.0 30 ............................................... ACAAAGACGCTGAAAATAACCGTCTTGCCT 603192 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 11 47 99.8 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : GTAACTTTGATGACTTTTGGGAATATGGTAAATTAGTGTTTAATACGTTAATCTTTTTAGAGCGTTATCTCTATTTGAACATTACAAATTCTTTGCGAAAAGGTATTAACATAAACTTTCTTAAAGATTATTCTACTCAAGGTTTATATAGAAGAATGGCTACAAAAGTAGGTTGAGCTGTATCATCAACGCTATGCCTGTCGCCTAAAATAAAACGTAGTTTCTATGAACGATAATATTACTTGAAACACCTTACAGTATACAGCTACTACCGACCATCCATGTTGAGGCGAATAGTCGAAGTAACTGTATTGGAACACTAATCTATATTTCAAGATGTATTAAAGTAATTGTTCATAGAAAACTACGTTTTCTTTACTTATAGCAGGTAAGAAGAGTAAGCTGATGAGATTTAACAAATATTACAAAAAAAAACAGCTGTCTGAATTGTACAATTATAAAAGTAGGGGTAGTATTATATATAATCACCTAAACAAATT # Right flank : CTCGTCCACTTTATGCCCTTGTAGTTCCTGTGTTGTGATTAGCTTTAAAATTAACGTGAGTTCGATATAAGAAAGTTGTTTTAAAAGTTGTAGGAGTGGAGTATTTTTTGTACCTTTATACTTGTAAATAAAAGAGTTACAAACAAATACCCACTCCTATGACTGATACAAATTTAATAGAAATATTCTGTATATTCGACGATTTTTGCAAGTATTTTACTCCTGAGTTGAAAAAACATACGCTTCAGGTACCCGGCAAGCGGCACCGCAACCGTGCTTCCCGTATGTCGGACAGTGAAATCATGACCATTCTGGTCCTGTTCCACACCCACCGTTTCCGAGACCTAAAGTCCTTCTATCTGGGCTATATCTGCCAGCATATGCGTGGAGAGTTCCCACATCGGATTTCCTACAACCGCTTCGTCGAGCGGCAGGCACAGGTCGCACTGCACCTGTTGCTGTTTCTCCAGACATGTGCACTGGGCAAGTGTTCAAGCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 604299-606579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019300.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 604299 46 89.4 30 T..A....C.-.G.................................. TGAATTAAAAGAACGTGGAATAATGCCAAG A,C,AC [604300,604304,604307] 604379 47 100.0 30 ............................................... GTTCCTTTGAGAGTATGGCCTTGCAAAAGC 604456 47 100.0 30 ............................................... CAATTCGGCACAGAAAAATCTTCATAAAGG 604533 47 100.0 29 ............................................... AGGCTTCAGAGTGTTATGTAGCTGTAACA 604609 47 100.0 29 ............................................... CCCATAACTATTTTGTTTTGTCGTTTCCT 604685 47 100.0 30 ............................................... TCGAAGCCTACGCTCGCCACCGCACGGTGG 604762 47 100.0 30 ............................................... CCTTGCCCACTGCATCGCATTGATGCCGTC 604839 47 100.0 30 ............................................... GAACTCCAGTACAACAAACGCATCATAGCC 604916 47 100.0 30 ............................................... CTCGGCAGTCATTTCAACTTTTACTTTGTC 604993 47 100.0 30 ............................................... TTGATAAGTATAAAGACATGCCAAATGTGG 605070 47 100.0 29 ............................................... TGCTGCGTCCTACTTGACTTGCATTTGTA 605146 47 100.0 30 ............................................... ATAATCACCAGATAAGCTTGTATCTACAGG 605223 47 100.0 30 ............................................... ATTTGAAGATTATAATATATCTGATGAAAA 605300 47 100.0 30 ............................................... GTTCTAAATGAGAAATAAATGCGTTTAATT 605377 47 100.0 30 ............................................... TATACCATTATCACAAACAATATTTAATAT 605454 47 100.0 30 ............................................... ATCATTCATTTTCTTAAGTGTATCGATGGT 605531 47 100.0 30 ............................................... CAATTTGTTTTCCAACACTCCACTATCCAT 605608 47 100.0 30 ............................................... GATATTAACGCAAGCGATTTCAACGATGAC 605685 47 100.0 30 ............................................... CCTTAGAGTCTACATAGGTACGAGCAAACC 605762 47 100.0 30 ............................................... CATCAAAGTCAGCGTTTGGGAAGTCGAAAC 605839 47 100.0 30 ............................................... TTCAAAGGAGTGAGTTTCAAACGTTTAGCC 605916 47 100.0 30 ............................................... TCTACATATATCTACTACATTAAACTATCT 605993 47 100.0 30 ............................................... AATGGATAGCTAAATACATGGCATTCATTC 606070 47 100.0 31 ............................................... ACTCTGAAAAGAATAGACCTTTCAGAGGCTC 606148 47 100.0 30 ............................................... TTCACCATAAATAAATTAAATATCCATATA 606225 47 100.0 30 ............................................... AAGGCGGTCGAGCGACCGCTTGATGCGTGC 606302 47 100.0 30 ............................................... AATAGAGAAATCACCAACCTTTAAGAAACT 606379 47 100.0 30 ............................................... TTGATATCATTGGTATTTTTTTCATAATTT 606456 47 100.0 30 ............................................... ATAACACTCTGAAGCCTGATGAAAAGTAGG 606533 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 30 47 99.6 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : CCATGAGGGGCTGGGCGGCAAAGGGAAAGTGCACCATGGGCTGGTTCTACGGATTCAAGCTACATCTTGTCATCAATGACAAGGGAGAGATTATCCAGTGGAAGCTCACGCCAGGAAACGTAGATGACAGGGAGCCATTGAAGGATAAACGCTTCACCGAGAGGTTGTTTGGAAAACTCTTTGCAGACAGGGGGTATATCAGTCAGAACCTCTTTGAGATGCTCTTTGTGGACAATATACATTTGGTGACCAAGATAAAGAAGAACATGAAGAACTCACTGATGAGCCTGTATGATAAGTTGTTGCTCAGAAAACGTTCTGTCATTGAGACAGTGAACGATGAACTGAAGAATGTATGTCAGATAGAACACACCAGACATCGCTCTTTTGATAACTTTGCAACAAATCTGATAGCAGGACTCATTGCATACAATCTGTTGCCAAAGAAGCCAGAAATGAACATAGAGATAATTGATAAAAGCAGGATAATTGCATAGAGC # Right flank : CTCAAATAGCTTAAAGCAATGAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGTTCTAACTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGTACTTCCATATTTTCTTTACTACCACAATGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTACTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTATATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //