Array 1 163873-164450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUV010000013.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3720, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163873 29 100.0 32 ............................. GTATTCCACTCCAGGTCGCTGGGCGCCCGTCG 163934 29 100.0 32 ............................. CACATGAGAAAAATCGACTATCACGGAACGAC 163995 29 100.0 32 ............................. CTGATGCTAGGCTCGGGATGCTGGGCGCACGG 164056 29 100.0 32 ............................. GGGGAGTAGATGCCGTTAACTCTAACTGAATC 164117 29 100.0 32 ............................. AGCTGAACGAAATTAAGCGCATGGAGAAAGCC 164178 29 100.0 32 ............................. AGTTGTGCAAGTGCTCGCAACGTTTGCGTATG 164239 29 100.0 32 ............................. AAAGTCTTTCGCAGTGGATCAAGTATCGCGAC 164300 29 100.0 32 ............................. AATGCCGTAGGTGAGAACACTGAGTCTGGCCG 164361 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 164422 29 93.1 0 A..........................T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCTGTGTGGTTGCTGGAAGTCCGTGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGTGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTATGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCTATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 228110-227302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUV010000007.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3720, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228109 28 100.0 32 ............................ CCAAGATAGGCCCAGGTTCAGGCGATCACCTC 228049 28 100.0 32 ............................ GTAACAACCAGATTATACGCCGCGAGCCTATT 227989 28 100.0 32 ............................ TGCTAGCAAGTTGGCCTATCTGGTTCCTCGCG 227929 28 100.0 32 ............................ ATGCTTCCAGAGCACGCGACTTTCCCTGATGG 227869 28 100.0 32 ............................ TGATAGGAAGTGGTCAGCGGATAGGGATTAAC 227809 28 100.0 33 ............................ TAACACATAACGGCGATAATCTGTATTCATGAA 227748 28 100.0 32 ............................ TATGTTTCCCGCAGCACGCTGGGTGAATGGAT 227688 28 100.0 32 ............................ CGCTTCTGACCAACGTGCGCCAGTAGACAGAC 227628 28 100.0 32 ............................ TGTAAACACCCAGGCGCGGGCGCTTCCCTGCT 227568 28 100.0 32 ............................ AGTGGCCGTGGTGGCAGCTTTACGTGAAATAT 227508 28 100.0 32 ............................ CGCGAGTGACGCCGACCTGCGTTCCCGTTTTC 227448 28 100.0 32 ............................ CAGAACAGTTCATCTTCATCTGTTTTGCTGAA 227388 28 100.0 32 ............................ GGCACCGTGTAAGGCTGGCTTGCGGGTTCAGC 227328 27 82.1 0 ...........TG.........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAATCTCTCGATTGCATATTCCTAGCATATGCAGATACCTAGTATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTCGATTATCGACTCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : CTTATCGGGATGCGTCGCTAGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTACGATGTTCACACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGATGCGCGGGCATATCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATTCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCCTGCCGTACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCAGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAACCTCTGGTTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCTCCGGCTATCAGGCTTCGCGCGCCAGAATCGGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 229728-229100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUV010000007.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3720, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 229727 28 100.0 32 ............................ GCCGGAATACGATTTAACTCCGGTGAGTGTGT 229667 28 92.9 32 ............A....C.......... CATTACAGCAACAGCAGAAGACATTACCGCCG 229607 28 100.0 32 ............................ TATTTGCTCCGTTACATCTGCGTACTTTTCAC 229547 28 96.4 32 ............A............... ATATTCGAAAAGGTTGCTGACTGGCTGGAGGC 229487 28 92.9 32 ............A....C.......... GTGTTCTGGCCCATGTTATTTCTGAATAACGT 229427 28 100.0 32 ............................ ATCCGTGGCAAAGGAAGGTTTGACAGATCATC 229367 28 100.0 32 ............................ AGGTTGTCACAGTGCCAACACAAATGAATGGC 229307 28 96.4 32 .................C.......... TCTGGGATTAGGGTTGGACGGCATGGGAAATG 229247 28 92.9 32 .........T.......C.......... GAGCATGATTGTAGAAATATGCCCCGCCGTGC 229187 28 96.4 32 ............A............... AGACCGTCCGGAGCGAGATCAGCAGGTTTAAA 229127 28 82.1 0 ...........CA....C......AC.. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 95.5 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : GAGGCGCTCTCTACATTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTGACAGCGTGAAATTTCGCATCGTACGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCAGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCGGAAGCTACCGTTCCCTGGTTCTGACCCTTTTCTGGCGACCAGCTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGGTTTTCGACAAAAAAGCCCTATTCTCTTTAAAAATCTGTCGGTTAGATTAAAAACCTAAC # Right flank : GTATCAGGACTTTCACTTCGCCAGATATCATCCGGTCAGACTGACCGATTAGTTAACCCAATCTTCCAACGTTAGCTCCTGTACTCGCTCAAACTCTCTCAGATTATTGGTGACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCGATTTTGATTTTCGTTGTGGCGTCTACCGCAGCACTATCCCAAGGCAGTACCGCATCGAGTCGGCGACAGAAAGCATCAACTAGTTGCATATGGCGTGGCGAGGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCACAATGAAGGAACATATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTACATCCTGACG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 238721-240096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUV010000007.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3720, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 238721 28 100.0 32 ............................ TGCCAGTAGATCGACAGATTGCTAAACGGGGT 238781 28 100.0 33 ............................ CCAGGTGAACCGCGTCACCGGATAGCATCAGTC 238842 28 100.0 32 ............................ CGCCCCAGCGGTGAAAGGGATCGTTACTGGCT 238902 28 100.0 32 ............................ ATTTCGTCCGCGCTATGCCGTCGATGTGCAGC 238962 28 100.0 32 ............................ ATTGCAACGATCAAAGAGGGGTTTGTTAGTAA 239022 28 100.0 32 ............................ TGACTCAATAACGATCACTTCACTGCGCGACC 239082 28 100.0 32 ............................ TGTGAAGGCGCGGTCAGTGAGCGAAACACATT 239142 28 100.0 32 ............................ GAGTATCGTGACCAGTAGCAGGACAACAAGAA 239202 28 92.9 32 ...........C.C.............. GTTACGACCGAGCAATGCGCCCAGCAGCACGC 239262 28 100.0 32 ............................ CACTCAGCAAGACCGGTTTTCATCCCCCCAAC 239322 28 92.9 32 ...........C.C.............. AGCGTACTCATACGCCGCTCAAATTGATCGGT 239382 28 100.0 32 ............................ CTTAACGCCAACAATTGCAGATGGTTTACCGC 239442 28 92.9 32 ...........T.C.............. AGACCAAGAATATATTGAAGGGTTTTCAGACT 239502 28 92.9 32 ...........T.C.............. AAAAAGGAATTACCTATGGGATGGGTTAATTG 239562 28 92.9 32 ...........T.C.............. TGCGTAGTTACTGTCCCATGCCTGCATACCAT 239622 28 100.0 32 ............................ GACGATGACCACTGATTATCCCAATCATTACT 239682 28 92.9 59 ...........T.....T.......... GATATCAGCGTATAGGCAGCTTAGAAAAATTGATGTGCCGCGAGGAATGTTTATTCAGG 239769 28 96.4 32 ...........C................ CAGCACAATGTTTGCTACCGGCGATTCCAGAA 239829 28 96.4 32 ...........C................ TCTTTCCAAAAGTCGCCGATTACGTGCAACAG 239889 28 100.0 32 ............................ ACCGCGCCGGCACGTAAAGAAAAGATGTTCCG 239949 28 96.4 32 .................T.......... TGTGTGTCGAGGTTGATATTCAGCCCCAGCAG 240009 28 96.4 32 ...........C................ AGTCTGCCGGATAACCTGTCTGTCGGTGGTTC 240069 28 75.0 0 ...........T.C......T...TCCG | ========== ====== ====== ====== ============================ =========================================================== ================== 23 28 96.4 33 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCATACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGCCGAGCTGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGAGCGGGCAAC # Right flank : GCGACATTAAGCGCTATTGTCTGGCTATTATCGAAGTAGCACTGCACCAAGTGCTCAATGCGCCCAACCCTTAAATAACGCATATTGATGGCCTTTTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTTTAGGGAATGCAAAATTGCGGGTTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTCAAATTCAAGGGGGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGTTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGAGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 246500-245992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUV010000007.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3720, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 246499 28 100.0 32 ............................ TACACACAATATGAGCTTGGCTCTGTGCGCGA 246439 28 100.0 32 ............................ AAGCTGATGCGTGACATCAAGAAGCCGAAAGA 246379 28 100.0 32 ............................ TACCCCCAGAGGGGGAAGATGCGCAGGTTTCT 246319 28 100.0 32 ............................ CGCAGGCGTTCAGCTCCAGTACCATATTGACG 246259 28 100.0 32 ............................ AGAGATTTGAGTGCTAAATTTACCACCCTCAA 246199 28 100.0 32 ............................ GGACGACTTCGTCGAGCCAATGTGGGCTATGT 246139 28 100.0 32 ............................ TGGCTTTCATCAAGCAAAAAACGAATCAGAGT 246079 28 96.4 32 ...........C................ TAGGACCAATTGACTCTTAATCAATTGGTCGC 246019 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAGGCGTATGAAAACGAAGAGCTGATACTTTCTCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGGCACGCGCGGCGCAACCCAGTCGCTCCACGCCCAACGAGTGCTAAAACGGTCGCCGCATTGTTGCTGATCGCGCTTTATCTGGCGCTTCCTCTGCACCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCCAGCGGTCAGCAGTTAACGGTATGTCTGGGAGACAATGACGAGCGGATCATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGCTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCACAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATAAGATTTTTACC # Right flank : ATAAAGCTTTCCTAAAATCAGCAATAAAAAACTCATAGGCAATGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCATATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACCAATGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCTGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTTGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGCTTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCATAACATGCTGGGGGAAGTGGACGCCATCATCGATGCCTATAAAACCACAGGTGATGCCGACTATCTGTTAAAAGTCGCCGTGGCCGACCTGCCCGGACTCAGCACGCTGATTAGCCAAATACTGTCGCAGAACAAAAGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //