Array 1 460639-462191 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWM01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5186 NODE_2_length_542713_cov_93.265488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460639 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 460700 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 460761 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 460822 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 460883 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 460944 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461005 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461066 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461127 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461188 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461249 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461310 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461371 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461432 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461493 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 461554 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 461615 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461676 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 461737 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 461798 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 461859 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 461920 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 461981 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462042 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462103 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462164 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478506-479023 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWM01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5186 NODE_2_length_542713_cov_93.265488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478506 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 478567 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 478628 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 478689 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 478750 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 478811 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 478872 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 478933 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 478994 29 93.1 0 ............TC............... | A [479021] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //