Array 1 7181-4025 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNN01000062.1 Streptomyces sp. NBRC 110035 strain TP-A0873, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 7180 29 100.0 32 ............................. CGATGGAAGCGCGGTCGCTCAACGACCGATAC 7119 29 96.6 32 ............................C TCAAGGCGGCTGCGAACTTCCCCATATGCTCT 7058 29 96.6 32 ............................T GCATCGCCGCATTCGCGGAATTCCTCACGTCG 6997 29 100.0 32 ............................. TGGCGCTGACCGTCGTTCACCGACGTGACGTA 6936 29 100.0 32 ............................. GCTCTCGCCGGGCACGTCGCCTCGTACACCGC 6875 29 100.0 46 ............................. TGGCTGCCCCGGCTGGCGTCGGTGGCGATGGTCGCGCCGTCGGTGA 6800 29 100.0 32 ............................. GAGCGCACGACATGCAGGAGACTACCCAGCAA 6739 29 100.0 32 ............................. GGCACAACCGTCCTGGCCCACCGGTACGCCTA 6678 29 100.0 32 ............................. CGGTCGGGGTTCACACGGTCAGGATGCCAGTC 6617 29 100.0 32 ............................. CCCGGCAAGGCCATCACGCTGATCAACTGCAA 6556 29 100.0 32 ............................. GACTGACCGGCGCCAGCCGAGGGGGAAGGGAG 6495 29 100.0 32 ............................. TTCTCGTTCTGCGCGTCGAGCACTTCCCGGGG 6434 29 100.0 32 ............................. GGCTTCTACGTCGGCACCGTGCTGGCTCCGGC 6373 29 96.6 32 ............................T GGCCTAGGCCGTGTCAGCCGCTCTGCACAACC 6312 29 100.0 32 ............................. ACCAACGAGGCCGCCCACCAACTCACCGCCGA 6251 29 96.6 32 ............................C GTCGTGGGTCTCGACGATGGCCCAGTAGGACT 6190 29 100.0 32 ............................. CGCGACGCTCACACCAGCGTCCGCCAGGCATG 6129 29 100.0 32 ............................. ACCTGGCCCACCGAAGACGTCGTCGACGACAC 6068 29 96.6 32 ............................A GGAGACCTGAGATGGCCACCCCGCTGTCCGCC 6007 29 100.0 32 ............................. GGCAAGAACGTCACCATCACCGTGCCGACCGG 5946 29 100.0 32 ............................. GGCGACCTGGATCTGCTGGAGCGGTGGGTGCA 5885 29 96.6 32 ............................C TGCTCCTCACTCAGTTGAGGATTGGCGAACCT 5824 29 100.0 32 ............................. CGCCGGAGAACGCTTCTTCCAGGGTTCCCTTC 5763 29 100.0 32 ............................. GCGATGACGTTGTCCAGGGGTTCACTCGCGTC 5702 29 96.6 32 ............................T ACCTTCTCCTCCTCGATCGCGGTCACCAGGGC 5641 29 96.6 32 ............................C TGCTCGAGGTTGATGCCGCGCCAGTGGGTGTG 5580 29 100.0 32 ............................. GGAGCAACCCCCATGAACGCCATCACCACCAC 5519 29 100.0 32 ............................. GCGCACCGAGGTATGCGGGCCAGGCCGAGGGA 5458 29 100.0 32 ............................. GAGGCCGCCCGTGCCCGCGCGCGCACCCCTGC 5397 29 96.6 32 ............................C TGGCGGGCGAGTGCCACGTGTTCGGCGTGCCC 5336 29 100.0 32 ............................. TAGCTGGGAGTGATGCTTTGGGTTCCGCTCCC 5275 29 100.0 32 ............................. ATCCTCCGCAACCCGCAGGCGGTCACCACGGA 5214 29 96.6 33 ............................C TCGGCCATGGCGTCGTCGAGGATTTCGGTGGCG 5152 29 96.6 32 ............................A CTCAGGGCGACCTTCCGCCACCGCTTGCTGGA 5091 29 100.0 32 ............................. TACGGAACCGTCCTCACTCTTACCAACATTCC 5030 29 96.6 32 ............................C GAGCGGTACAACGAGTGCCGGCCGCTGATCAT 4969 29 100.0 32 ............................. GCGTCGCCCACCCCGGTCAGGCCGAGCTTGAG 4908 29 96.6 32 ............................T CCGGCTCCCCTTCGGGTCTACCCCTCGTGCGG 4847 29 100.0 32 ............................. CCGGTTGTCGACTCGCCCGTGGTCGCCCACCG 4786 29 96.6 32 ............................T CCGGGGTCGTTCTCGGTTCCTCCGTCGAAGAA 4725 29 100.0 33 ............................. TCACACTATTTACCGCACGAACACCCCGGAGAG 4663 29 100.0 32 ............................. GTGGTGTACGGGGACTCGGCCGGCCGGGGCGG 4602 29 100.0 32 ............................. CGGGAACCGCGGCTGCACGTCCCCCTTCCCGG 4541 29 96.6 32 ............................T GCCGACGACATGATTGGCAAGATTTCCGAGGG 4480 29 89.7 32 .....TTT..................... CGCCAGAACGCCCAGTACTTTCCCACCCCGAC 4419 29 96.6 32 ............................T TCGTTTCGGCGGGGGCCCGGTTCGTGGGGGAG 4358 29 100.0 32 ............................. TCCTACACGGCCAAGGGGTGGCACGCGCAGAT 4297 29 100.0 32 ............................. AGGTGACCGAGCACGAGCGGGGGAGCGCAGGA 4236 29 100.0 32 ............................. CGTCGGTACGGGTTCCCGGAGTTGTAGCGGAG 4175 29 100.0 32 ............................. GCGGCTCCGATGCTGCGGCCGTTCTTCCCGGG 4114 29 96.6 32 ........T.................... CCCGCACCCCGAAGTGCCGGATGGCAGGCAGT 4053 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================== ================== 52 29 98.7 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : CCCGAGGGGACGGACTTCGAGGATCCTGAGACCAACCTCCTGTGGGACGAGCACCTAGGTACCGTCCCCGGCGGCACCAATTACGCCGGCACCGCAGACCTGTCGGCACATGGAATGACGGACAACCACATCGCTGTCATCGGGCCCGAAATCAACGAAACCGAACGAACGCCATGACCGTCATCATCCTCATCGCCGCCCCGGAAGGCCTCCGCGGCCACCTCACCCGCTGGATGGTCGAGGCCAGCGCCGGCGTTTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGAACTCCTGGCCACCCGCATCGGCGACGGCCAGGCCATCCTCATCGAACCCGCCGCCAACGAACAGGGATGGGCCGTCCGCACCGCAGGCCGCGACCGCTGGCAACCCGTCGACTTCGACGGACTGATCCTCTCAGCCCGCCCCAAAAAACAACTGAATGAAAACAGCAGCCCCGCCCGATAAAACCGCAGCTCAGGAAGT # Right flank : GTCAACCCCCGCTGGTCGGTCTACGAGGAGCAGTCGACCCTCAGCGAACACCCCGCAGTAAAGACTTGGGAATGACTTTCAGATGACGTTGACCCATCAGTAACCACGTTCTGGGTGCCGCCGGAGCGAACGGTCCTGACATGCTGAGCGCCATGGTGACTCTCGATGGAAAGCCCGTATCCGTAGACAACCTGCTGCCCCTGGCGCTCACGAACGTCGGTCACTTCACGTCCATGCGCGTCGACACCGACGGCAGCATCCGCGGCCTGACGCTGCACATGGAACGCCTCGGACGGGACTGCAAGATCCTGTGGCACGCACCTTTGAATACCGACCGCGTGCGCGAGTACGTCCGCCAGGCTTTGGAGGGGCAGAGCCGCCCGTGCGTCGTGCGTGTCACGGTCTACGACCCCAAGGTCGAGATGGGCCATCCGGCCGACGCCAACGAACCTCACGTCCTCGTGTCCGTGCGCGGTGCCGACGCCCTGCCTCCGGCTCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17890-17128 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNN01000062.1 Streptomyces sp. NBRC 110035 strain TP-A0873, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17889 29 100.0 33 ............................. GCGCACCTGAGCGGGGCGGTCCGTTACAAGGCG 17827 29 100.0 32 ............................. GCGTGGGTCCCGGCGGAACAGGGTCCTTGGGG 17766 29 100.0 32 ............................. CGACGGCATCCTTCCGGCCGTCGCCCCGCGCG 17705 29 100.0 32 ............................. GTGGAGCGACCAACCCACAGTCCTTGCACTTA 17644 29 100.0 32 ............................. ATGGCAGCATGACACTGAAGAAGAGGGCCCAG 17583 29 96.6 32 ............................T TCGGGGTGCGGCCCGGAGACGGCCACACCGGA 17522 29 100.0 32 ............................. TACCCCACTGCGGCACCGACGAAGAACGTCGT 17461 29 96.6 32 ............................A CTCTCGAGGGGTTTGATGTAGCACGGTGGGTC 17400 29 100.0 32 ............................. CCGACAAGATGCACGCGCCCACCCTCTACTGG 17339 29 100.0 32 ............................. GTGTCGGGGGCGTGGCGGGTGAGCATGTTGCC 17278 29 100.0 32 ............................. CCACGTACCGGCTCGTGAACGAGCGCTACAAC 17217 29 96.6 32 ............................A TTCCACGGGGACCGGTACCGGGACTTCTCCGA 17156 29 86.2 0 ........T.....T.....A.......A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.2 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCCTTTGACCTGTGTTTTCGCTGGTCAGAGTGGTTCGGTTACTGTTCGATCTTGGCGGTCCGTAGCGGTCGGGAGCGGGTAGTGGCGGTACTGATGCTGACTTTGATGAGGTCACGTCAGATTCTGCGACGGATCGACGGCGTGCTGACCGGGGTCCTACAGAGGCAGTATCGACCTTGCGGCTGCGAAGGTCACGTGGGCGGCAGTCGGAGAGTGCGACTGGCGCTCGACAGCAGGATCAGAGGACCCGCAGCTTCGACATCGGCTCGGGAGCAGACGCGTCCGGGTAGTCTCCACGTCCCGGAGGACTGGGCCGGCGCCTCTGTCGGCCTTTTGCGGGAGGAGTTTGCTCGGTCGGTCCGCGGTGGGCACGGTGAGTTACTACCGGCGGCGACTGACGGCGTCCTGTCGATGTTGCTGAACTGGTCCTGGCGTCCCCTCCCAAGAGGGGACTGAATGAAAACAGCTAACCTGCTTGGTAACGTCCCTGCTCAGCAAGT # Right flank : CCGCCACGAGAGTGATCGCCGCTGGCAGCAGGTCACCCTGCACTGGAAGGCACACTCCTCACGAGCCCGACCGTCAGCCGTTCAAGTCAGGAAGAACTGATTGTTTCCGCAGGCCAGGCCCTTTTGTCAGTGGTGGCCTATAAGGTCTGGCACCCAGCTCTGGTGGGTACGTGGGGGCACAGTGGATGTTCGGGAATTAAGCGGGCGTTACGAGCCGGTTGTGGTGCGGGCGCTGGAGACGTTGTGGGGTAAGTCGCGAGAGCGGGCAGGAGGCAAGACGAACCTTCTGCTTGCGCACCTTCTGGACACTGCGGCAGTTGCCGAGCTGCTGTGGGACGGCTTTCTCGCGGGTTCGACGCGAGCGGCGCTGGATGAGGTAGCGGGCGGCCCGGGACGAGGGCGGCGGTTATTAGCCTGGTTGTGCGGAGTTCACGACTGCGGGAAGGCGACGCCGACGCATCAGCGTCTGTGGCCCGAGGGCGCCGAGACTGTGCGCAGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //