Array 1 6446642-6447638 **** Predicted by CRISPRDetect 2.4 *** >NC_022116.1 Amycolatopsis mediterranei RB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6446642 28 82.1 30 .GTT........A..C............ TGTCGTGTAGCGGGTGTCGTCGTCGTTGGG 6446700 28 85.7 30 .A...TT..C.................. CTGCCCGTGGCGGAACCTGATCGTCACCAA T [6446707] 6446759 28 85.7 33 .C......AT................G. CGCGCCTTCGTCCCAGCTGGCCGGCTCGACGAT CT [6446763] 6446822 28 85.7 30 A.TT..................G..... CAGGGAGATCGACACGTCGGACAGCGTTTC 6446880 28 89.3 30 .CG..T...................... CGGAAGCCGGTTGAGCTTCGCGCCGCACCG 6446938 28 85.7 31 TC...T................C..... GCAGGCCGACTACGAGAAGCAGAGCCCGCAG TG [6446944] 6446999 28 82.1 33 .AGC......T..........T...... GATCCCGCAGTAGCGACAGGTGTCGCCGTCGCG 6447060 28 82.1 31 ..TT.......A.G.A............ ACACGATCGGCGGTTTCACCCGACCTTCGCG 6447121 28 96.4 33 ........................A... CGCATTGGCTAGATTGTTCTGGAAAGTCTGATC 6447182 28 89.3 33 ..T..............T......A... CGTCTCGAACGTCGTGGGCGAGACGACGTGCTC 6447243 28 92.9 33 ..T..................T...... CGACTTCAAGCTGCGCCTGGTCACCCTCGGCGT 6447304 28 96.4 33 ............A............... GCCGTTCGGGTCGCACTCGTACGTGGGCAGATC 6447365 28 100.0 33 ............................ CGTCACCTGCCCGCCGGGCTACACCAGCCTGTT TG [6447388] 6447428 28 92.9 34 ...............A..A......... GGACGGCGTCAAGAACTGGTACGACGAAGTGGCA 6447490 28 92.9 33 ........T..A................ CTACGTGTACGTTGGCGCCTACGGAACAGGAAC 6447551 28 100.0 32 ............................ CGCTCGGGCAGCTCAACCTCGCCACTGTCTAC 6447611 28 85.7 0 C.T..T...A.................. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 89.7 32 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : GTCTCCGCGCACGCGGGGCTCGTCCGCGCCGAGCAAGCGAAACAGCGGCGACAAGATCGAGTTGTCGCCGCACAGGGCTGGTCACCCACCCGACTGCGCCAGGTCCCGTAGAACGGGTCACCCCCGCAGCCTCGAGGCTGGCCCTATCATCGACCCCGTAGCTGCTGGAGCGCCAACAGTCCCCTCGTCGCACGCGCAGGCAGATCCTGACAAGTTGGGCGATAACTTCAAGGAGGTAACGAGCGTCCTTGATTACCGCCAACTATTTCTCCGCAGCAGAGACGTGTGGGTGCGACGCAGTTCCTTGCGTCGCGCCGACCGTGAAGCATCCGGAAGACGCGATGACCACTGGTCTGGCGGGCGCTCACTGGAGGGTGTCACGGTGAACACCGAACAACTTCGTCGACTAGGCAAGATCAGCATCGGCAGACGCTGCGAACACCCGAGCCAAACTGAATAGAAAACACTGTTTCACTTGGTAGAGTCGCAGGTCAGCAAGA # Right flank : CCTCGATCGAATGTCCGAGGAATTTGACGCGGCCCCGGCACCGGCTGTCGAAGTCGTTGCTGCGGCAGGGTTGCTCTATGACGGCACTGCATGGACCGGGGCACTGAAGCCTGGCTGCGGTCGCTGACCTTTGACCGGGTCGGGGTCCGGCTGGCCTTCGAGGAGGCCTTCGACGCGGTGCTTGCTACGCGGGCTCAGCGGGCCCGGCTGGACGCTGCGATCACCGAACTGGCGGCGCCCCCGGTGTTCGCGCCGGTTATGGGGCGGCTGGCCTGCCTGCACGGGGTAAGCACGCTGACCGCGTTCGGCCTGGTGACGGAAATCGGGGACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6448465-6448737 **** Predicted by CRISPRDetect 2.4 *** >NC_022116.1 Amycolatopsis mediterranei RB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6448465 28 96.4 33 ........T................... GGGAGCACTCGCATGACGACCACGGAGCCGGCG 6448526 28 100.0 33 ............................ CTGGTTGATCCGGATGTCCCAGTCGTCCACCGC 6448587 28 100.0 33 ............................ CACGGTGGCGGTGGCCTGCTGATACTGGGCGTC 6448648 28 100.0 33 ............................ AGACGGTTGGGGCAACCTGAAGGCGGCCGGCCT 6448709 28 89.3 0 ..C....................A..A. | G [6448726] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTTGTCCCCGCACGCGCGGGGCTGGTCC # Left flank : GACTGGCGGCGGTTCACCGGTGCGTCGATCGGCGCCTACGTCAGTCTGGTGCCCGCGGACTCTTCGAGCGGTGAACACCGTCACCAAGGAGCGATCACCAAGACCGGTAACTCCGATGGCCAGCGGTTGCTGGTCGAGGCCGCCTGATACCACTGCAAACGCTACCGGCTCAGCCGGGAGCTGATCCGCCGCCAGGACGGCCAACCACCGGCGGTCCGGCAGCGGGCGGAGGTCGGCAATCGGCGGCTGCACTGCCACTGGACTCGCTTCGAAGCCCGCAGCAGACGCCCCGCCGTCAGCGCGGTCGCCGTCGCCCGGGAACTGGCCGGCTGGTGCTGGAGCCTCGCCACCCATGGAACCCGACACGGGCTGACTCCCCCGAAACCGCCGGCGGGAGACCGGCATGCGCAGACAGGCGCGAGGAACGACCCGCGATACAGCGATGAGCAGCACCGTCCCCAGCGAAAGTGCAATACTCGCCCCAAGACAGGTCAGCAAGT # Right flank : CTACAGGGCTAGATCTCTAACATCTGGAGCCGGAGGCGGCGTCTGACGTGGTGTCGTCGGGCGTCCGCCTGGTGTTCGCGGCGCCAAGCAGACCAGCGAAGGCCGTGGTCGATGGCGTGATCATCTTTGTCGGCGAGGTTGAACAGGTGTCGGATCTCGGCGATGGTGAGCGCGATCAGGTGCCGGGTTCGGGTGGTCAGGGTGTCCGTTCTGTCCACAGGTGGAGTTCTTCTTTTTTTGCTTTGTGTCTCATGACTGCGAGGAATGCCATGGCGAGCATCGAGAGGGTGATGTGCCGGTACCAGGCGTGGTAGAGGCGGACCTGGTAGTTGTCGAGCCCTGCTTCGTTTTTGGCTGCTTCGAAACATTCCTCGATCGGCCAGCGGGAACCGATGACGCGGACCAGTTCCGTCAGCGGTTCCCGGTGCGGGTTGTAGCAGTGAAAGTAGGCGATTTCGCCGTCTGCGATGTTCCGCCGGAACACATACTGGTGACCGTCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCACGCGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6451277-6452082 **** Predicted by CRISPRDetect 2.4 *** >NC_022116.1 Amycolatopsis mediterranei RB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 6451277 28 82.1 33 ..TA.......ACG.............. CACGATGCCGCGCTCGACGAACACCTCGTTCCC 6451338 28 100.0 33 ............................ CTCGGCCAGCACCCGGCGGAGGTTCCGGATACT 6451399 28 96.4 33 .........A.................. GATCGATTCGCTGAGGACCTCCGGCAGCACGAT 6451460 28 89.3 33 ............C..CT........... GGTGAAGGGCCTCTCCCCGGCCGGGCAGCGGTA 6451521 28 100.0 33 ............................ CCACACCGGCAAGCCCGAGGCGATCCTCACGCA 6451582 28 92.9 33 ........T....T.............. CGACACGACGGCGAGCCGGTCGTCGCGTTCCTT 6451643 28 92.9 141 .......................CC... CAGGACGTCGCCGGACTCCCCATCGAGAGGCGGGCTACGCCCGAGAAGGCCCGCCCGACCTCATCACCGCCGAGTCGTCCCGTCAGTAGCGAAGTGAACGAGAAACACTGTTTCCAATGATAGATTCGCAGGTCAGCAAGT 6451812 28 85.7 33 ..T........ACG.............. CTGCACGACCGGCCAATCGACCGCCTTGTAGTC 6451873 28 82.1 33 ..T........ACG...A.......... CACGAAGTAGATGCCCGCGTGCTGGATGGTGAG 6451934 28 89.3 32 ..T........AC............... CATGCCGGTCACACCGCTCGGATGCCGCCGTT 6451994 28 89.3 33 .........A..C......A........ TTGGGTGGCCGACTTCCTCGGCCTGGACAAGCT 6452055 28 92.9 0 ............C.........C..... | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 12 28 91.1 43 GTCGTCCCCGCGTACGCGGGGCTGGTCC # Left flank : TTGCATCTGGGCTGTGAGCAGGGTCAGAAGCCGTTGTCGATCGTATTGACCGCCGGGCAGCGTGGCGACAGCCCGCAGTTCATTCCTGTCCTGCGTGGTATCCGGGTGCCCCGGCTGGCCGGTGGTGGGCGGCCGCGCACCCGGCCGGATCGGGTGCTGGCGGATAAGGCTTACACCTCTAAGGCAAACCGGGCTCACCTGCGCAAACGTGGGATCAAGGCGACCATCCCGAGCAAAACTGATCAGGACGCGCACCGCAAGGCCAAGGGGTCGAAGGGCGGCCGGCCACCGGCTTTCGACCCCGAAACCTACAAGCAGCGTCACGCCGTGGAGTGCGGTATCAACCGGCTCAAACGCCACCGCGCCGTAGCCACTCGTTACGACAAACTCGCTGTCCGCTACGAAGCCACCATCCACATCGCAGCCATCGACGAATGGCTCTGACCGACTTCGATACAGGCCCTAGGTCCCGGCTGCCCGATCCAGTGGTGCCAGTCGTC # Right flank : CGGCGGAGAGCGACAATAGCTCTCCGCCGAGAGCACTATCTGAACTGCGTTCGCTGCCAGTTGGGGTTAAAAGTGAGGTAACCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGAA # Questionable array : NO Score: 4.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //