Array 1 234028-238846 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXVU01000004.1 Chryseobacterium sp. c4a scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 234028 46 80.9 29 A..T..T...A.-.G.CT..T.......................... CATGTAAGTTTCACAAAACATAATCCTAC 234103 47 100.0 30 ............................................... TGGTTCCTTGTACCAGGCGGATCAATTCTA 234180 47 100.0 30 ............................................... GAGACTAAAAAACAGATTTAAGAACCGGTT 234257 47 100.0 30 ............................................... CATGTCATCATAGATCTTTCTTTGTGCTGT 234334 47 100.0 30 ............................................... AATATGATCATATCTTCATTTTGAATTATG 234411 47 100.0 30 ............................................... AAAGTCACCTTCAGCAATTTTCCCTACCGG 234488 47 100.0 30 ............................................... CTTCTTTGTAATCTGAGCTGTTTCGTCAAT 234565 47 100.0 30 ............................................... TTCCCAGTAGTTTATACCTGCTAACGGCTG 234642 47 100.0 30 ............................................... TTTGATCTTTCATGTCCATGTCCTTTACCT 234719 47 100.0 30 ............................................... GGCAGCTACATCAAAGTCCACTACAGTGGC 234796 47 100.0 30 ............................................... AGTGAACTCACGGTGATCATTATGCTTACT 234873 47 100.0 30 ............................................... TTATCTGGTATTAAGCCGGACTAATTCAAC 234950 47 100.0 30 ............................................... AAGAATATTCTGTAGATGGTATTAACGAGC 235027 47 100.0 30 ............................................... AATTCCAGTCTGGTTCTGAAGCTCTCTTCA 235104 47 100.0 30 ............................................... AAGCTCCTATTCTAAACGAATGCTGCGATT 235181 47 100.0 30 ............................................... CTTAAAAATGGAGGGATGAGCTCTACAGCA 235258 47 100.0 30 ............................................... ATTAATAATATCTTTTCTTTCAACTTCATA 235335 47 100.0 30 ............................................... CAAAAACGAAAAGGGCTTAACAAACACTGA 235412 47 100.0 30 ............................................... TATACTTTTTAAGATCCTCTAAAAGACCTT 235489 47 100.0 30 ............................................... GGCAATTGTTGAGTTAGATCTATTAGTTAA 235566 47 100.0 30 ............................................... AAGAGTATTCAGTAGATGGTATAAATGAAT 235643 47 100.0 30 ............................................... AATATTACCTGATAACATTAGAGGCTTCGA 235720 47 100.0 30 ............................................... ATCTGCTGTTGTATTAATATTTCTAGCCTC 235797 47 100.0 30 ............................................... CTGTGACTTCGTCTCCATAGTGAACAATGC 235874 47 100.0 30 ............................................... CTTGGCGATTAACAGGAGATGAAGAACCTA 235951 47 100.0 30 ............................................... CTGTGACTTCGTCTCCATAGTGAACAATGC 236028 47 100.0 30 ............................................... TTTTATTTTATCAGAAATAGCCTTTAGACG 236105 47 100.0 30 ............................................... AATAGGCTTGTTCTTCAGAATTAATAAACG 236182 47 100.0 30 ............................................... TGAAGCAGGTGTCTGGGTTTGGCTCGGAGT 236259 47 100.0 30 ............................................... GTTAAGCCTTTCATATTCTAGCATTAAACC 236336 47 100.0 30 ............................................... CATAAATATTACCTACCCATCCAGTATTAT 236413 47 100.0 30 ............................................... TAACCAACTTTCATCAGTTCTGTATTTATA 236490 47 100.0 30 ............................................... TGATGTTTAAAAGTGAATTCACAGGCTTTT 236567 47 100.0 30 ............................................... GGAAAAAAGAAACATAACCAATAACCGGCG 236644 47 100.0 30 ............................................... GAAAGCAGTACATTTTAAGCCTGAATTAGA 236721 47 100.0 30 ............................................... TACGGCCCGCTTTTCCCAGGCGTTGTAACA 236798 47 100.0 30 ............................................... TTGAAGGAATTCTATATAACGTATCCTGTA 236875 47 100.0 30 ............................................... CAAAGCAACGTTTGTCCCCTTTGCCACATT 236952 47 100.0 30 ............................................... TCATTCCAGGATGATATAAAGAACGAAAGC 237029 47 100.0 30 ............................................... ATTAAAAAAATTAAGTCCGTGCATCTTGTA 237106 47 100.0 30 ............................................... CATCTCGCCAAAAACCAATCGACTCATTAA 237183 47 100.0 30 ............................................... CAAATTCCACTTTAGGCTTTTTATTTCCTT 237260 47 100.0 30 ............................................... TATCCAGAGGTTTCATTGTAGGATGCTCTG 237337 47 100.0 30 ............................................... TCTCTTGAATTTTATCCGATATCATGGCCA 237414 47 100.0 30 ............................................... ACATGAAACTGTATGAATATCGTTTTCGCT 237491 47 100.0 30 ............................................... TCTGATTCCTTTTTGTCTGCAGTATTCCTT 237568 47 100.0 30 ............................................... AAAGAAATCCTGGACTTCTTTTCCTGGATC 237645 47 100.0 30 ............................................... TGAAGCTGAAAGAATAAATGAATCAAACAG 237722 47 100.0 30 ............................................... AAAGACGACTGATATACGCTTTCAGACATT 237799 47 100.0 30 ............................................... TGATGGATCTGTTGGAATAGCAATTCAGCA 237876 47 100.0 30 ............................................... GTTGCTCTGGGTGTGGACGAGCTGTCCGCT 237953 47 100.0 30 ............................................... TTCCTCTTCAACGGGGGAAAGTGTTACAGA 238030 47 100.0 30 ............................................... TAATCTACATAAATTAACTCAAAATGTACC 238107 47 100.0 30 ............................................... GAATTATCAATTGGCGAGAGAATTATACGG 238184 47 100.0 30 ............................................... ATGGAAAGGAGCAACATCTGCCGGTTTAAA 238261 47 100.0 30 ............................................... AAGAGATAAGGTGATTATCAGAGACGAACA 238338 47 100.0 30 ............................................... AATACCTTCACAGACAATTGGCTTATATCA 238415 47 100.0 30 ............................................... GGTTTAATTGCTTTATCTCTATCATCTACG 238492 47 100.0 30 ............................................... TTGGTCGTATCATTGGCCTTTATAGGTCTG 238569 47 100.0 30 ............................................... GACGGAATGTTTAGGCAAAGACGCTACTAA 238646 47 100.0 30 ............................................... TTCCGGGTTCAATTCAATAAGCCCCTTTGT 238723 47 100.0 30 ............................................... AGTATTGATTATGGCCCAGCAGCCACACTA 238800 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 63 47 99.7 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : TTAAGGTGAGCTTCAAGATCTGCAGGTTTTTTATCTTTTTCAGTTACTGAAGCAGGGTCAACTTTAATAGAAGTCATATCAATATTGAAGTTTCCAGCTACTACTTGTCCACCTTCAATGTTTAGATCTCCAGATTTTACAGTAAGCGTTCCCCAACGAGGAGCAAAACCTCCTTTGTGGAAAGCTTTCCAGTTAACTACAGAAGCAGCTGCATCTACTGTTAATGCTTCTCCTTTACCTTCAGCCACTGTTTGCTCAGTAGCCACTGCTGTATCTGTTTTTTCTTTATTAGTACATGATGCTGCCAGTAATCCTACTGCTACTAATGCAATTACGCTAATTTTTTTCATATTATTGAACTGTTTAAAAAAGTTTATTGTTTTCGGATACAAAAATAGAAAAACCTTATGGGTCTTCTCTTATCATACATCAAGAAATGTAAATTTTGCTACCCGTGTTAGGAATTGTAACATGGGAAGCATTAAATGAGAGGTGGAAAT # Right flank : CCTCAAAAAACAATCCACTGAAAATCAGTAGATTGTTTTTGTTTTTAGGATTTAAATTTTAGAATAATTCAAGCTGTTGAAAGGTTGGAGGTGGTTCTTCTTTATTTCTGGCAAAGAATATTTCAATATCTCCAAATTGCTTGTCAGTGATACACATAATAGCTACTTTTCCAGCTTTTGGAAGCATAAACTTCACTCTTTTAATATGAACTTCAGCATTTTCGCGACTTGGACAATGCCTTACATACATTGAAAACTGAAATAATGTAAAACCATCATCAAGTAAAGATTTACGAAAGCGGTTCGCATCTTTCATATTGGCTTTAGTTTCTGTTGGTAAATCGTATAATACTAAAACCCACATAATTCGGTAAGCATTAAACCTTTCGGCGTTCATATCAATTCAGGGTAAGAGATCAGACGTTTTTCTCCTGTATAACATTTATACAGTGATGTAACTGTTGTTTTCACAGCAACTAGCAATGGTCTGGTTTTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //