Array 1 2613810-2613598 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEHV01000009.1 Klebsiella variicola strain 1TM tig00000132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2613809 28 100.0 33 ............................ TAGCGGGCATCTGTAAGAACGGCTTTTCGCCAT 2613748 28 100.0 33 ............................ TGTTAAGCATGGTTTTGTCAGAGTATATGGACT 2613687 28 89.3 33 ...........G..T..........G.. TAAAAAAGAAAAACTCTCCGGTTCCCTGTTCGG 2613626 28 85.7 0 ............C.T......C.....T | C [2613602] ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCAGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGAGGCGGGCAGGCCAGTAGGGTATATCGGTCCTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGTTTGATAAGGAAATTAAAATGAAAAGAGCCGAATTAGACGTTGTGGTTTTAGGTGAGGATTTGCCGAATGAAGGGCTGGTAAAAGGAACGCTTGGTACGATTGTTATGGTTTTTAATGCGCCAACAACTGGCTATCTGGTCGAGTTTTGCGACGAGAAAGGAAAAACAATCGCAATGCCAGTTTTATTCCCCGCCCAGCTAAAGCGCTATTTCACGATTGGTAACCTGAAGTCGCTGATGGTGGAAGGTAATTATCCCGTAGCCGACCCTGTAGACCCAGATGTCATGGCAGATTTAATGCACAAAGTCGCGCCTGTTGAATGGGAGGACAAGAAAAGAAGGGTCTATGAGGATATTCAACGACTATTGATTAGTCGGCCGGACTACGCGGATATGTTCAATATTATGGATGGGGGTGAGTACAATGGCATGACATTGTACAGCCTGGTGCAGGCAGAGAACGGTGAACCTGCATGGTCGAATATCTTTGTTCGAAAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102453-103936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM008916.1 Klebsiella variicola strain 1TM plasmid p1TM-225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102453 28 96.6 32 .....-....................... TCCGGATGATGACATTTCGGGTGATAATCATA 102513 28 96.6 33 .....-....................... GGGGCCAGCTCTCGGACGAGAAATGTGACGCCC 102574 28 96.6 32 .....-....................... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 102634 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 102695 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 102756 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 102817 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 102877 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 102938 28 93.1 32 ..........-..A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 102998 29 96.6 32 ...............T............. TGACTTTTGTGAAATTTTTTTCTTAAAAAACT 103059 28 82.8 32 ..........A..AC.T....-....... TTAATGTTTTGTTAATTTATAAGTGTGGTGAA 103119 29 93.1 32 .........T...C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 103180 28 86.2 32 ...C......-..AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 103240 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 103301 29 93.1 32 ............TC............... TGACTTTTGATGAGATTTTGTCGATAAAAATT 103362 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 103423 29 86.2 32 .A......T...TC............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 103484 29 96.6 32 .............A............... TCGAAGGCAACCACCAGGAACAATAAAACCCC 103545 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 103606 28 89.7 31 .....-.......G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 103665 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 103726 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 103787 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 103848 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 103909 28 86.2 0 ..........A..A........-.....A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 93.1 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTTGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //