Array 1 44379-42693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAADL010000001.1 Streptococcus agalactiae strain iGBS251 NODE_1_length_196721_cov_65.3711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44378 36 100.0 30 .................................... AAATAATTCATTATTCTGTTGTGTAATGCA 44312 36 100.0 30 .................................... TCCCGACGGGAAAGATAGTAGTTTCAAGGT 44246 36 100.0 30 .................................... CCCAGTTGCAATGACTGCGCCAGAAGTCGG 44180 36 100.0 30 .................................... TAATGGTTTATCTCTTTTTTCATCTGTTAT 44114 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 44048 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43982 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43916 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43850 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43784 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43718 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43652 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43586 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43520 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43454 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43388 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43322 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43256 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43190 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 43124 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 43058 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42991 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42925 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42860 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42794 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42728 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //