Array 1 52525-53223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDI01000006.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2671 NODE_6_length_258594_cov_5.58592, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52525 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 52586 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 52647 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 52708 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 52769 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 52830 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 52891 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 52952 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 53013 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 53074 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 53135 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 53196 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69864-71724 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDI01000006.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2671 NODE_6_length_258594_cov_5.58592, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69864 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 69925 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 69987 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 70048 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 70109 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 70170 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 70231 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 70292 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 70353 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 70414 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 70475 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 70536 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 70597 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 70658 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 70719 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 70780 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 70841 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 70902 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 70963 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 71024 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 71085 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 71146 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 71207 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 71268 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 71329 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 71390 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 71451 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 71512 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 71573 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 71634 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 71695 29 93.1 0 A...........T................ | A [71721] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //