Array 1 47365-48001 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMV01000034.1 Cronobacter malonaticus strain cro881W1 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47365 29 100.0 32 ............................. GGCAGGGGTTAAACGCGGAACGGCTGAATTAG 47426 29 100.0 32 ............................. GATTTAGCGCGGCTTGCGGCGCGGGTCCTTTC 47487 29 96.6 32 ............................A AATTCGGGGTTGACCTGTGAGCCAGACAATCA 47548 29 100.0 32 ............................. GCTATTCTCTACTCTTACGAGCACGTTGGCGT 47609 29 100.0 31 ............................. CACATTTTCAAGACTTATGCACAAACTAAAA 47669 29 100.0 32 ............................. ACCGCAGAGTCAATAAAGGCGGGGAATTATCC 47730 29 100.0 32 ............................. GACAGGGAGACCGAGAAAAAATTACGCAAACT 47791 29 100.0 32 ............................. CATACCCGGCTGCGTGATTATTTTGTTGATGC 47852 29 100.0 32 ............................. GTCATCGCCACGATATTCATCGGTGGCAAGGA 47913 29 100.0 32 ............................. CTTTAATTCGCTTGAGCGCACACTCATGCCGC 47974 27 89.7 0 ..........................A-- | G [47991] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : | # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-371 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMV01000047.1 Cronobacter malonaticus strain cro881W1 contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 32 ............................. AATGCATGCCACTCTTCAACTCCTACGGCCAG 97 29 100.0 32 ............................. GCTTTTTCTTTGAGTGGGTCGCCCTTCGCCTT 158 29 100.0 32 ............................. GCTGGATTCTGAGTAGCGTACAGACTCGTAAT 219 29 100.0 32 ............................. TTCGGTACGCCAGTGCCGATAATTCGGTCATT 280 29 100.0 33 ............................. TCGTCTGTATCCGTTTATCCGTGGCCACCTCAC 342 29 82.8 0 ................A.AT......AA. | T [358] ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CCGGGCGTGTATTTCAGAGCCGGTTATTTGGCGTGC # Right flank : GCCCGGGATTTCGCGCCTGGCACTCGCCGCCCCATTTCCCGCCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26892-27103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMV01000047.1 Cronobacter malonaticus strain cro881W1 contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26892 29 100.0 32 ............................. CGTAACAGGTGACACTTATTGATAGTGCTGAA 26953 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 27014 29 100.0 32 ............................. GTCTGGCTCGCTATTCAGGACGTAAGAGCGGA 27075 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : CCATTCACTATCCCGGATTCCTGGACAGTGGAGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2761-2366 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMV01000066.1 Cronobacter malonaticus strain cro881W1 contig66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2760 29 100.0 32 ............................. GCATCGAGAACTTCCATTAACGCCTCACTGCC 2699 29 100.0 32 ............................. TACCAGGTCTAACGGGGGCCGTGGATTTTGAA 2638 29 100.0 32 ............................. GACTCTCAGGCCGTGCATCTTTGGGTGCATCT 2577 29 100.0 32 ............................. CGCAGCACGGCAGAACGGCCCCGCAGGGGCAA 2516 29 100.0 32 ............................. ATTCCGGGCGATAACGGCAGGGTGATTAGCAA 2455 29 100.0 32 ............................. TAATCAACGTATTGACGCTGAACATCTTCCAC 2394 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGGATAAACCGCCCTCGCATCTCTTTTGGCTGTTCGAGTG # Right flank : TGGTTGAGTAGAATTGCCAGGCTGGTGGGTGCGCTTTGCTTACCCACCCACATATGTTGTTAGGCCTGGTGGGTGCGCTTTGCTTACCCACCCTACATATGTTGTTAGGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGAGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTTCCGTTCTTCCCACAGCTATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //