Array 1 388415-387350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGJ010000004.1 Roseospira marina strain DSM 15113 Ga0394286_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 388414 36 100.0 39 .................................... ATGAGGACTGGCCGATAGAGCCGGCCCGTTGGTCGCTGG 388339 36 100.0 36 .................................... GGCGATCTCTTCGGCCGAAACCCCGCCCTCTGCGCC 388267 36 100.0 37 .................................... TGCGCGCGGTGGCACAGGAGAGCGGGCTCACCGTGTT 388194 36 100.0 37 .................................... AAGGGGAACACCATATTGCAGTCCCAGAGAAACGGAG 388121 36 100.0 40 .................................... CCCGGCCGGGTCGGCTTCGTCCGTCCAGTCCAGCCACATC 388045 36 100.0 37 .................................... CAGGCTGGGCGCCATCTGTGGTCACGGCCGCGAATGC 387972 36 100.0 38 .................................... GCGGCCGTGCAGGCTGCCGCGTCGAGCAACGACAACGC 387898 36 100.0 38 .................................... AGGCTTTCACAGCCGGTGACCACCAGACACAAAAAAAC 387824 36 100.0 40 .................................... GTGAACACGATCTTGGCCTGGTCCTTGTCGGCGGCCAGCG 387748 36 100.0 36 .................................... GATCCGGTCGGGCGTGACCACGGTCTCGGCCGTGCC 387676 36 100.0 35 .................................... ATTCTGACACCCCCGCTATTCTGCCCGCGATGAGA 387605 36 100.0 38 .................................... CAGCGGGGAAATATGCACCTCGTCCCGATCGTCGTGTG 387531 36 100.0 37 .................................... TAAAACCGGTAAACTTCGTTGGTACCGTATTCGACGC 387458 36 100.0 38 .................................... ACAACAATGCGGGCGGATGTGGTTAGGCGTTTGATGAC 387384 35 88.9 0 .......C......................C-.G.. | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.3 38 CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : TCACCTACGACATCGCCGACCCGAAGCGCTGGCGTCGGGTGTGGAAGGTCATGAACGGCTACGGCGAATGGCTGCAACTGTCCGTATTCCAGTGCCGCCTGTCGCGCAAACGTCTCGTCCAATTGCGCGGGGCGCTGACCGAGGCCATCCACGACGGCGCCGACCATGTGCTCATCCTTGATCTGGGCCCGGCCGAGACCGTGAAGCCCCGCCTGGAAAGCCTGGGAAAGACCGTGGCGGTGGTGGAACGCACACCGATCATCGTGTAACCTTCACTCGGATTGCTGTGAGGCGCGAGCCGCCCGGCCGCTGCGAGCGCTCCTGTGGCGCTCGCGACTCGGGGAGCGCTCGCAAACGCTTTTTGACATTGTAAAACAAAGCGGTAGCAGGTGCGCGGCGCAGTTCCTGAGCACCGTGGGAGCCGTATCGACTCGGGGCTCTGGCGAGCGCTCGAAAACGGTGGTAAAATCCCAACTAGAGCCGCCGGTTACAGCCGAGCT # Right flank : TGGCAGCATCGCCTGCCGCGCCGTTGGCCTGATGATACGTCTGGGACGAGATCAGCAAACGCATGTTTCGGGGATCTGTCGGCGGCCGAGTGACCCAGCGCGCGCCCACATGCGCGGCGAGGTGCAGTCGGGTTGGCGCATTTTTGTTTGGCGCCCCTGCGTACACCGCGCTTACACAGCCCTTCTTACTGGCTCATGTAAGCAAAAACGGCCCCCTTTCGGGAGCCGTTTTCGAAAGCCTTATCAGGCCTTAAAACTGGAGCGGGCGATGAGATTCGAACTCACGACCCCAACCTTGGCAAGGTTGTGCTCTACCCCTGAGCTACGCCCGCATCCGTTCCTGTGTTGGCCCCTTAATTACCCTGCGGAAGGTCCGCGTTTCAAGAGGTTTTTCAAGAGCTTTTCACAGGGTCGACGAGGCTGGGTGGCGGCGCCGTGGAGCGCCGTGCCCCGTCGAGGAGCGCGACTATACTCAGCGCTCGCGGCATTGCAACACCGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 401330-402160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGJ010000002.1 Roseospira marina strain DSM 15113 Ga0394286_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 401330 32 100.0 34 ................................ GTGGGTCCGAACACGCCGACCTGGAAATCCGCCG 401396 32 100.0 33 ................................ CCGGCGCACGTCAGCCCGGTCTGCCTCGACATC 401461 32 100.0 34 ................................ GCTTCCTTGGACTTCAGCGGGGACAAAATCAGAG 401527 32 100.0 33 ................................ CAGGCCGTGCCGATCACGCCCACCTTGAGCGGT 401592 32 100.0 34 ................................ TGAAATTGAGGCACAGCAGGCTGGGTCGTTTGAC 401658 32 100.0 38 ................................ ACGGGGCGCTGGACTGCTGGACTACCGCCAACGCCCCG 401728 32 100.0 34 ................................ ACGGGTGCAGCCGGGGCAATGGCGGCGAATGGGG 401794 32 100.0 34 ................................ GGGGCGGACTCGGGCGATCTCATCGAGGTCGCCG 401860 32 100.0 34 ................................ TTTTGTCGTGTCATCAATTCCAGAGGACGCCCCT 401926 32 100.0 39 ................................ ATGAGCTTGCGCGACCATTTCGCGGGGCGGGCACTGACC 401997 32 100.0 34 ................................ GCCCAATGGCAAGCCGGACGGGATCAAGATCATC 402063 32 100.0 34 ................................ TCATAGGTGAGTGTTGGCGGCCGCCACGCAGCGG 402129 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 13 32 100.0 35 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : TCGTCACGTATGACGTCGCGGTTTCGTCGCCCGGCGGCGCGAAAAGGCTGCGCCATGTGGCGCGCGCCTGCCAGGACTTTGGCCAGCGCGTGCAGTTGTCGGTGTTCGAAATCGAGGTCACACCGGCGCAATGGACCGCCTTGAAGGCGCGCCTGGAAGATGTCATCGACCCAGCCCAGGACAGCCTGCGTTACTACAACCTGGGCGCCAATTGGCAGCGCAGGGTCGAACACGTGGGGGCCAAACCCGCCCTGGATCTGAACGGACCACTAATCGTGTGACAGCACGGGAAGCGGTGGGGGGGGGCATCCGGAAAGAGGGGGCGCGAACCGCGAGCACCCCGGCAATCCCAGGCAGGTTCGCACCGGCCCTATACCCCTGAAAACATGGCGAATTCGTGCTGCACCGACAACCGTCGGGTCACAAACTGGGCTGTGAGGGGCAAGGTCCGCGCCACCGTCCCGGTTTTCCGTTCGTGTTCAGCACACTACACTGGTGGA # Right flank : CATGCGGGTCGCGCAGGAGAGCAGTTCGGCCGGGATGGTCAGGCAGGCGCGGGGCGCCCCCCCCTCACCCTGTTCCAGCGCATAATCACCGTCAGGAAGTGCACGCTGAAAATCGTGCGGGGGGTTGCAGGAGCTGGATATCGGGCGGATATGCGGCTGCCGACCACGACGCCCTTACGGGCCAGACACCACCACCTCAACCTTTTATGGTTTTAAGCTTGTTTAATTTTGCAGGAAATTTTAGGTTTATACGTGAATACACTTTTCGCGCGAGCGCCGTTGGCAGGCGCAGCCGACTGGCCTATGCCGGTTCTAACTTACTGATGGGGTCCGACGATGCGTTTTTTTCGATTAGTCCTCGCCGTGTCTTTTTTATTTGGTTTTTCAAATACAGGGCACGCTCAAAATTGCAACTCAGGCGCCTCTAATTATTACTCTGAATATAACTTTGGAGAAACACTCAGCGCACTTAGAAATGGCTGCACGAACACGCTTGGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4305-2621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGJ010000034.1 Roseospira marina strain DSM 15113 Ga0394286_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4304 37 75.7 38 ..GCGCGG...........A..C.............T GCCGTGCGCGACCTGAAGACCGGGAAGAAGGGCAACTA 4229 37 91.9 38 ...................A.G...A........... CACCTCGAGGTCCAAATGCCCGTCTTGATCGGCCCCCA 4154 37 89.2 36 ..............A....A..C.............A AGGCGGACCTGCATGCGGTCGCGGCCGAATGAGCAC 4081 37 97.3 37 ....................................T CGGTGGTCTCGACCGCGCCGGCGTAGCGGTCAGCGAA 4007 37 100.0 38 ..................................... AAGATGCCACCCTTTCCTTTGCAGCAAAGGGCGCTGGA 3932 37 100.0 37 ..................................... GCCAGACTGGCTACGGCCATGACGAAGCCATCACGTC 3858 37 100.0 38 ..................................... AGGCTGGCGAGCCGATTTTGTTCCAGCACCACCAAGGC 3783 37 100.0 38 ..................................... ATGAAGACGGTGCTGACATCAGGACTGACATCATGGAT 3708 37 100.0 38 ..................................... GAGCCGCAGACGACCGCGGCCGTTCGTCCGGACAAGCG 3633 37 100.0 39 ..................................... TCGGCGCCGTCCCCTCCGAAGAAGACCGCCCCTTCTGTC 3557 37 100.0 38 ..................................... GCCGTGACGCGAAAGAACCCGTTGGCGCCGCTGGCGCC 3482 37 100.0 43 ..................................... CCGCACAGGGGGCGACGGCGGACACAGCCATACAGCCTAACGA 3402 37 100.0 37 ..................................... GGTATGATGACTGGTATCTTATGGCTCTGGACGAATT 3328 37 100.0 37 ..................................... TCGGAGAGATCAGCGCGGACCAGGCCGCGACGGACAT 3254 37 100.0 38 ..................................... GCGCAGTGCGCAAGCCATGATCCTCGGCCCAATCCACC 3179 37 100.0 35 ..................................... GCTGCCACGAACACCGGGGACTTGAGCGCTGCCAC 3107 37 100.0 39 ..................................... CGTAACTCGCGTTGGAAGCAAAATACGTCTTGCTCAGCC 3031 37 100.0 36 ..................................... GAATGACACTGCCAACACCGCTTTCATCAAGACAGT 2958 37 100.0 38 ..................................... TCAGCAGCACGTCCGCATGGCACGGCTGATCCAGCGGG 2883 37 100.0 38 ..................................... GATGTGAGGGCGGATCGGGCTCATGTGGCGACGTCTGC 2808 37 97.3 39 ....................................C ATATACGTCAACAATTCGTCATCTACTTGTTCTTCTCCA 2732 37 100.0 38 ..................................... TTTCGTCGTGCTTGCCCTTGTGGGCTGGCACGTCGAGG 2657 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 23 37 97.9 38 GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Left flank : CGCGCGACCCGAGGGCCGTAGGGCCGACGGTGATCGCGCGTCAACAAAGACGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCCCGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCACGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGAGCGAATCAAAAAACTTCGAAAGTCGCCCGCGTTTTCTTTTGCGCGCAACAACCTTCGGCGGGACGCGCCCGCCTCGGGTT # Right flank : GGCCCGGCTGTAACCGGCAGCTCTGATTGAGATTTTAGCACCGTTTTCGAGCGCTCGCCAGAGCACCGAGTCGATACGGCTTCCACGATGCTCAGGGGCTGTGCCGCGCACGCGCTACCGCTTTGTTTTACAATGTCAAAAAGCGTTTTCGAGCGCTCCCCGAGTCGCGAGCGCCTCAAGAGAGCTCGAAAAAGCCGGGCAGCCCGCTCCAAACCGGACTTCGGGTGAAGGCTACACGATGATCGGCGTGCGTTCCACCACCGCCACGGTCTTACCCAGGCTTTCCAGGCGGGGCTTCACGGTCTCGGCTGGTCCCAGGTCGAGGATGAGCACATGGTCGGCGCCGTCATGGATGGCCTCGGTCAGGGCCCCGCGCACCTGGACGAGACGTTTCCGCGACAAGCGGCATTGAAAGACGGACAGTTGCAGCCATTCGCCGTAGCCGTTCATCACCTTCCATACCCGACGCCAGCGCTTCGGGTCATGGCCGGTCCCCTTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //