Array 1 167748-168315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJL01000004.1 Pectobacterium brasiliense strain Y31 Y31.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167748 28 96.4 32 ...........T................ TGTTGCGATTTCGGCGTCAAAAAACCGACCAC 167808 28 92.9 32 ..........AT................ AGCAGGATACACATAAGGGTCACGGCGGCACG 167868 28 100.0 32 ............................ AGGATACGCGGCAAGCGGCGTATGGTCAGCCC 167928 28 100.0 33 ............................ GAGCATATCCTTTCAGATTTGCGGCTTTGGGAA 167989 28 100.0 32 ............................ TGACTGACGCTAAATCCAACATTTCCTGTTCA 168049 28 100.0 32 ............................ TACACCTACCAGCTAATGGTAATCCGCACCTG 168109 28 100.0 32 ............................ AACAAACCAATTAGTGAAGTGATTGCGGAGAT 168169 28 92.9 32 ...........TG............... GCGCTGCCACCCTTCGGATCGTTGTCGAGAAT 168229 27 92.9 32 ...........T..-............. TCAACTGTGCACTGGGGATCGGGGCTATTTCA 168288 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCATTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATGAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACGG # Right flank : AATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCACTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174847-174218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJL01000004.1 Pectobacterium brasiliense strain Y31 Y31.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174846 28 100.0 32 ............................ ATTCCCGGCTATCGCTCAACACTTCGCGCCCA 174786 28 100.0 32 ............................ TCGGCTGCTAATACCACCAGTAGCAACTAATA 174726 28 100.0 32 ............................ ACTACAGCCACATCGACAACAAGCGCAAATGG 174666 28 100.0 33 ............................ CCTCGGTGTTTACCGTGCCGAACCCGTCCTGAC 174605 28 100.0 32 ............................ GTTGAAGCGCTCAAGGTCATGGATGCGTGGGG 174545 28 100.0 32 ............................ GTACTTGAAGCCATTCAATCTGTATTGAAATC 174485 28 100.0 32 ............................ TGCTGGCTACGGGCCGCAATCTGTATCGTCCC 174425 28 100.0 32 ............................ TGTAGGCGTCGAATTAAATCGCTCATCCTGTG 174365 28 100.0 32 ............................ ATCAACGCGATAACCTGTTAAATATTTTGATG 174305 28 96.4 32 ..................C......... CAGACGCCGTCGCTGCCGACTGCCTGAACTTT 174245 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATAGGCAGCTTAGAAAGCGCCGCAATGCTCAAAGACAAGCCTGTAACAGTTCACTGCCGTATAGGCAGCTTAGAAAGGCCTCTACCCGACAACTGCCCGCACTGTGCAGTTCACTGCCGTATAGGCAGCTTAGAAAATGATCTACCGCCAGAATTAATGTGAAAATGAGTTCACTGCCGTATAGGCAGCTTAGAAAACTAAAGCCGATTCTGAATTTAAGTTCATTCAGTTCACTGCCGTATAGGCAGCTTAGAAACCGGTGGAAGAAATGATACTGGCGCGTTACGAAGTTCACTGCCGTATAGGCAGCTTAGAAAGCGTTGTCATCTTCGGTAAGCTGGCTGAAATTGTTCACTGCCGTATAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA # Right flank : TAGTTTTAAGCGTCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 176260-174970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJL01000004.1 Pectobacterium brasiliense strain Y31 Y31.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176259 28 100.0 32 ............................ GATCTCTTCCGCTGGCAGGCCGTATTCAACGA 176199 28 100.0 32 ............................ ATTCCCCCCATAAGGCGCGAATCTGTGAGGCA 176139 28 100.0 32 ............................ CCTGAACCCGGCCACTGAGCCGGGTTTTTTGT 176079 28 100.0 32 ............................ TCAGCGCAAGGTACGGACACAATCGAGGTTGC 176019 28 100.0 32 ............................ TGGAATATTTCGCCCATCGCACGCTGGCTGTC 175959 28 100.0 32 ............................ AGCTGTCGCTGGTCTCCATTGCGGTCATATTG 175899 28 100.0 33 ............................ ATCCCAGCGACTGCCGGGACGTTCGTGATCGGC 175838 28 100.0 32 ............................ CGCTCGCGCTCGATCCGCTGCCGTTCTGTGGT 175778 28 100.0 32 ............................ AGCACCCAATTGATTGATGAGGCTATGACGTT 175718 28 100.0 32 ............................ TTTATCGTCGGTAGCCAGTGAGTAAATAGCTT 175658 28 100.0 32 ............................ TGAACAGCGAGCCAGATGAGCGACTCAATGCG 175598 28 100.0 32 ............................ GTATCAACCTCGATCTGACGCTTGGATGCACC 175538 28 100.0 32 ............................ ACACCGGATGAGGCGTTCCAGGTATCGAATAA 175478 28 100.0 32 ............................ AGTTCCGCAGAGAGAATTGCCGCCATTGCCAC 175418 28 100.0 32 ............................ TTCTGCAACTTCGATCTCTTTCGCTTCTTCCC 175358 28 100.0 32 ............................ GCGCCGCAATGCTCAAAGACAAGCCTGTAACA 175298 28 100.0 32 ............................ GGCCTCTACCCGACAACTGCCCGCACTGTGCA 175238 28 100.0 32 ............................ ATGATCTACCGCCAGAATTAATGTGAAAATGA 175178 28 100.0 32 ............................ ACTAAAGCCGATTCTGAATTTAAGTTCATTCA 175118 28 100.0 33 ............................ CCGGTGGAAGAAATGATACTGGCGCGTTACGAA 175057 28 100.0 32 ............................ GCGTTGTCATCTTCGGTAAGCTGGCTGAAATT 174997 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACAAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTCACTGCCGTATAGGCAGCTTAGAAAATTCCCGGCTATCGCTCAACACTTCGCGCCCAGTTCACTGCCGTATAGGCAGCTTAGAAATCGGCTGCTAATACCACCAGTAGCAACTAATAGTTCACTGCCGTATAGGCAGCTTAGAAAACTACAGCCACATCGACAACAAGCGCAAATGGGTTCACTGCCGTATAGGCAGCTTAGAAACCTCGGTGTTTACCGTGCCGAACCCGTCCTGACGTTCACTGCCGTATAGGCAGCTTAGAAAGTTGAAGCGCTCAAGGTCATGGATGCGTGGGGGTTCACTGCCGTATAGGCAGCTTAGAAAGTACTTGAAGCCATTCAATCTGTATTGAAATCGTTCACTGCCGTATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 184832-185338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJL01000004.1 Pectobacterium brasiliense strain Y31 Y31.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184832 28 100.0 32 ............................ TAGGATAATGGGGGAATAAATGGACGCTCAGG 184892 28 100.0 32 ............................ GTCAACTTTTTGTTCGATCATTTGCTGGCGAG 184952 28 100.0 32 ............................ ACAGATATTATCGTTCATCGTGGCTTCCTGTA 185012 28 100.0 32 ............................ CATTCTCATTCAGAATCGTGCTGAACTGATGC 185072 28 100.0 32 ............................ CGTTTCTGAGCGAGTTATGACGTTTAACGAGT 185132 28 82.1 32 .T.A....T..T........A....... ATAAAAAAGCCCGCAGCGATTATCAGCAGGCT 185192 28 82.1 32 .T.......T.T.C...T.......... ATGACAGGAAAACCAGCGCCAGCAGCCACGGA 185252 28 96.4 32 .T.......................... GTCGCGTCGTTGCCGCCACTTGCCGCTCCCGC 185312 27 82.1 0 .T.........T.C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 93.6 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAGGGTTTTTCGCGATAAAATGAGTATTCTCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : ACTATCGAAATGCGTCGCTGGCGCGACGCATTTTTGAGGACTACTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGACTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //