Array 1 1784112-1784347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024740.1 Akkermansia muciniphila strain EB-AMDK-4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1784112 31 87.9 34 ........-.T.-.T.................. CCCCATATATTATCAGCTACAATGGTCATATTAT 1784177 33 100.0 37 ................................. CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA 1784247 33 100.0 35 ................................. TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC 1784315 33 93.9 0 ...........T....................A | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 95.4 36 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGTGCCTCTTCTTTTGTGGAAAACAGAATAAAACGGTTTCCGGGGAGAGTCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCGGGCTTTTTAACGTATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGACGCCCAGGA # Right flank : AAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGATCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGAGGATTTTTCATGTGCCGGGGAATGTATTTTTATCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATAAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGT # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1853730-1852970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024740.1 Akkermansia muciniphila strain EB-AMDK-4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1853729 36 100.0 30 .................................... AGACAGGGCTGGGGGACAAATACGTGGAGG 1853663 36 100.0 30 .................................... AGCACTACAGCATAATATCCAGAGCCAGAG 1853597 36 100.0 30 .................................... GTCTTTGTTCCTAATGGAAAGAACACCGTT 1853531 36 100.0 30 .................................... CTTCGCATAACACACATAATGCAAAGTCGG 1853465 36 100.0 29 .................................... TCATCACTCTTTCCGGCGTTCCCCTCATC 1853400 36 100.0 30 .................................... CATTTGACAGGGGAGACTTCCATAAGCTCA 1853334 36 100.0 30 .................................... AATATCTAAAATCCTCAAACCTCTACACCG 1853268 36 100.0 30 .................................... GGAGGAACCTTCTACCCCTACGGACCTGCT 1853202 36 100.0 29 .................................... TTGTGGCGCAGCATGCGCCGCGGCCATTG 1853137 36 100.0 30 .................................... GTAGCGCAGGTAGAGCTGACGGATGATCAT 1853071 36 100.0 30 .................................... GACTTTGATGCCGAAAATAATGCTTATCAT 1853005 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : AGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTTCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //