Array 1 38317-36214 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAH01000011.1 Trinickia caryophylli strain Ballard 720, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38316 29 100.0 32 ............................. CGCGTCGCAGGGACGTGTTTCTGCAAGGTCGA 38255 29 100.0 32 ............................. GCGGCATGAGCGATACCAGCGAAATTCAGATT 38194 29 100.0 32 ............................. TCGAGGACACCCGTGAATTCGTGCTCGTGGGC 38133 29 100.0 32 ............................. CTGACGTCCAGATGAATTTCATGACGCCCGTA 38072 29 100.0 32 ............................. CGGGATCACAGTAACGGGTAACGCAACGATCA 38011 29 100.0 32 ............................. AGGTGGCGAACGTCATAGAATCAACTGGCTCA 37950 29 100.0 32 ............................. ATGTGATCTTCCAGATGCTGGACGAGTGCACT 37889 29 100.0 32 ............................. TTGAGGGCTGGACGCCGGAGCATGATGACAGG 37828 29 100.0 32 ............................. CATGATCGCGGGCGTGACGCTCGTGGCGAGGA 37767 29 100.0 32 ............................. CCCTCGAATCGCAGCTAGCGGCGCGAGAGAGC 37706 29 100.0 32 ............................. CTCTGGAACAACGGCGGCACTCTCTCGGTTTC 37645 29 100.0 32 ............................. CGCTGATCGTTGGCAAGGACGGAATCAAATCG 37584 29 100.0 32 ............................. GCGGTGATTATGGGGTGCTGTTCTACGCGCAT 37523 29 100.0 32 ............................. CACGACGAACATCATGACGCCGAGCACCGTAA 37462 29 100.0 32 ............................. CCGGCCCAATTGGTGACGGGCAGACGCGGGAT 37401 29 100.0 32 ............................. CCTTTGAGTATCCATAGGGGGGCTGCGTGACC 37340 29 100.0 32 ............................. GATTGCCGCGCATTCCGCTCGGTCGCGGGCAC 37279 29 100.0 32 ............................. ACGACGAGCTGGGGTAGCGGCGTCGAGCAGAT 37218 29 100.0 32 ............................. CGCTCGTAGCCGCCGCTCGCGTTTCGCTTGAG 37157 29 100.0 32 ............................. TGCGTCATAAAGGAATGCAGCGGGAACGCGAT 37096 29 100.0 32 ............................. CCAGTCGGCCGCGGCTCCCCCGTCGGAGACAA 37035 29 100.0 32 ............................. CGTATGAGCGCAGTCGAAGAACGGCAAGACGC 36974 29 100.0 32 ............................. GCCGGCGTCAGTAACTTCTACCTAAATGGGGC 36913 29 100.0 32 ............................. CCCGCTTAAGCAGCTTCTCCCGGACTACAAGG 36852 29 100.0 32 ............................. GTGTACTCGGTGAGCTACGAGTCGGCCCTGCG 36791 29 100.0 32 ............................. ACGGCGGGCGTCTCCACGCGCAAGGTCTGGAA 36730 29 100.0 32 ............................. CAAGCCTACGAGACGTTCAAGGCGCTGTCGCA 36669 29 100.0 32 ............................. GTTCGATAGAGTAATACGCGACCCACTCGCCG 36608 29 100.0 32 ............................. ATCAATTCGGTGCGATGGCGGGCGACGACAAG 36547 29 100.0 32 ............................. AGCATGATAGGGCTCGGCGTGAGCCACGCCAG 36486 29 100.0 32 ............................. GATCAGCCGTGGCGTTGTTTGCTGCGGTCGTG 36425 29 100.0 32 ............................. CACCTCGTCGATGCCGCCCAAGGCAAGCATCC 36364 29 100.0 32 ............................. GCAATCATCAGCGGCGGCCTGACGCTCAGCGC 36303 29 96.6 32 ......................C...... CCTATGACGAGGGGATGGCCGAGCTCGAACGG 36242 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : TTCCGGACATCGAAACGTTGCTTGACGCCGGTGAGCTAGCCAAGCCAGAAGCGCAGGGCGTGGTGGACGCGGCATTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCGAGGCTGCGAGGGCGGATGGCGATCTGGCTGCTAGAGGTTCGTGCCGGCGTTTACGTAGGCAACTACAACCGCAAAGTCCGAGAATATCTATGGCAACAAGTGGAAGAGGGGTTGGATGATGGCAACGCGGTGATGGCTTGGCAGGCTGCTAATGAAGCAGGTTTTGATTTTGTCACGCTGGGGACCAACCGCCGCATGCCAGCCGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCTTTGCAAATCGGTGATGTAGGCGAATAACGCCGTTCACGGCGTGATGGGACCGGGTTCGTTCTTTAAAAATTGGTAAGTTTCGGAGTGTCGTTTTTGTTCTGTAAAATCAGTTGGTTACAGTTGGT # Right flank : ACTCCCATTTACCGTCGGCGCAGGCCTTCAAGGCTGCTTTGCCGGGCGGTTACACGCGAGCTTGACGGCAGCCTCGTTAGTCGGGGGGCGACTGCTCTAGCCTTGCGGTGGCAGGCCTCTTCGTTGTGCGAGGCGCATTGGAGTCTCATTGCGCCAAGCAAGATCAGAAATCACTGACACATACGCGGTGCCATTGGCGTTTGCGTTCTATGTTGCTCGGTCATCTGGCATTTCTCACCGCTACGCACGGAGTTGCAACTGACAGACACCGGTACGTGCCAGGGCATCGAGATGTCCGCAGGACAGTTCTGGCTACTCGCGGAGCATCCTAGCCGGCTCATTGGAGCTGTGCCTTCAAAACGCGGCGGCGGTGACGGCCGGCAGTGACGCCGGCCGATTTACGTAAGCTCTCAGCTCCAATCGTCCATGTCGTGCTTGATCGTATGGCGGTTCGCGATCAGCGTTTCGACGCTCGGCTCGTTGTTCATGGCGCGCTGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //